Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01-
06] 72,411 sequences; 55,543,795 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq71308 104 4e-20
seq68194 104 4e-20
seq68193 104 4e-20
seq67810 98.7 2e-18
seq7112 98.7 2e-18
seq71174 95.1 2e-17
seq68109 95.1 2e-17
>seq71308
Length=56255
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| | || |||||| |||||||| ||| | || | || | ||||
Sbjct 55956 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCCTTGGCCGAAAGGCCAGT 56013
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| | |||||||||||||| |||||||||||||||||||||||| |||||||| ||| |
Sbjct 56014 GGGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 56073
Query 121 G 121
|
Sbjct 56074 G 56074
>seq68194
Length=1359
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| | || |||||| |||||||| ||| | || | || | ||||
Sbjct 122 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCCTTGGCCGAAAGGCCAGT 65
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| | |||||||||||||| |||||||||||||||||||||||| |||||||| ||| |
Sbjct 64 GGGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 5
Query 121 G 121
|
Sbjct 4 G 4
>seq68193
Length=3657
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| | || |||||| |||||||| ||| | || | || | ||||
Sbjct 122 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCCTTGGCCGAAAGGCCAGT 65
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| | |||||||||||||| |||||||||||||||||||||||| |||||||| ||| |
Sbjct 64 GGGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 5
Query 121 G 121
|
Sbjct 4 G 4
>seq67810
Length=1273
Score = 98.7 bits (108), Expect = 2e-18
Identities = 96/121 (79%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| | || |||||| |||||||| ||| | || | || | ||||
Sbjct 157 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCCTTGGCCGAAAGGCCAGT 100
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| | |||||||||||||| |||||||||||||| ||||||||| |||||||| ||| |
Sbjct 99 GGGGAGAAGCTACCATCTGTGGGATTATGGCTGAATGCCTCTAAGCCAGAATCCGTGCTA 40
Query 121 G 121
|
Sbjct 39 G 39
>seq7112
Length=127
Score = 98.7 bits (108), Expect = 2e-18
Identities = 96/121 (79%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| | || |||||| |||||||| ||| | || | || | ||||
Sbjct 6 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCCTTGGCCGAAAGGCCAGT 63
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||||| |||||||||||||||||||||||| |||||||| ||| |
Sbjct 64 AGGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 123
Query 121 G 121
|
Sbjct 124 G 124
>seq71174
Length=36456
Score = 95.1 bits (104), Expect = 2e-17
Identities = 95/121 (79%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| | || |||||| |||||||| ||| | || | || | ||||
Sbjct 24669 GTACGAGAGGAACAGTTGA-TTCAGA-TAATTGGTATTTTCCCTTGGCCGAAAGGCCAGT 24726
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| | |||||||||||||| ||||||||||||||| |||||||| ||||||| ||| |
Sbjct 24727 GGGGAGAAGCTACCATCTGTGGGATTATGGCTGAACACCTCTAAGCCAGAATCTGTGCTA 24786
Query 121 G 121
|
Sbjct 24787 G 24787
>seq68109
Length=3702
Score = 95.1 bits (104), Expect = 2e-17
Identities = 95/121 (79%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| | || |||||| ||||||| ||| | || | || | ||||
Sbjct 386 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGCATTTTCCCTTGGCCGAAAGGCCAGT 329
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| | |||||||||||||| ||||||||||||||||||||||| |||||||| ||| |
Sbjct 328 GGAGAGAAGCTACCATCTGTGAGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 269
Query 121 G 121
|
Sbjct 268 G 268
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 818625346304
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |