Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq66719 316 6e-84 seq39007 194 5e-47 seq72007 140 1e-30 seq14246 91.5 4e-16 seq2226 91.5 4e-16 >seq66719 Length=492 Score = 316 bits (350), Expect = 6e-84 Identities = 352/481 (73%), Gaps = 79/481 (16%) Strand=Plus/Plus Query 101 CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGT 160 |||| || ||||||||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 CCTTAGAAGTGGTAGCCATTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGT 60 Query 161 TACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATT 220 |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 61 TACCCGTTACGACCATGGTAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATT 120 Query 221 TGAATGAACCATCGC---CGGCTCAAGG----------CCATGCGATTCGTTA-AGTTAT 266 |||||||| | |||| | | ||||| ||||||| || | |||||| Sbjct 121 TGAATGAATCGTCGCCATCCTCACAAGGAGGATATTTAATATGCGATCCGAAAGAGTTAT 180 Query 267 TATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCT-T 325 |||||||||||| | ||| | | |||||||| | |||||||||||| |||| | Sbjct 181 TATGAATCACCA--GTTTGATAAAGTGTGCTGGTTTTTAACCTAATAAATACATCCCTCT 238 Query 326 CC-----------------GAAG-------------------------TCGGGGTTTTTA 343 | |||| ||||| || Sbjct 239 GCACTGAATGACAGACAAAGAAGCTTTTTACACTCCTTTGCCCCGCGCTCGGGACCTTGC 298 Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAG-------------------T 384 ||||||||||||||||||||||||||||||||||| |||| Sbjct 299 GCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGTAGGGTAACTCTGACAAAGAGTA 358 Query 385 AAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG 444 ||| || ||||||||||| ||||||||||||||||||||| |||||| || | ||||| Sbjct 359 AAGAGACCATCAAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCGCCGTATAA 418 Query 445 A-TTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 ACAAGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 478 Query 504 G 504 | Sbjct 479 G 479 >seq39007 Length=198 Score = 194 bits (214), Expect = 5e-47 Identities = 131/144 (91%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||||||| | |||| ||||||| |||||||||||||||| Sbjct 55 GTACTCATTCCAATTACAAGACTCTTGTCGAGCGCCTGTATTGTTATTTATTGTCACTAC 114 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 115 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 174 Query 119 TTTCTCAGGCTCCCTCTCCGGAAT 142 |||||||||||||||||||||||| Sbjct 175 TTTCTCAGGCTCCCTCTCCGGAAT 198 >seq72007 Length=37421 Score = 140 bits (154), Expect = 1e-30 Identities = 97/111 (87%), Gaps = 7/111 (6%) Strand=Plus/Plus Query 77 GGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTC 136 || ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| Sbjct 23134 GGCAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATTTCTCAGGCTCCCTCTC 23193 Query 137 CGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACT 187 ||||||||||||||||||| ||||||| ||||||||||||| || Sbjct 23194 CGGAATCGAACCCTAATTCTCCGTTAC-------GACCATGGTAGGCCTCT 23237 >seq14246 Length=96 Score = 91.5 bits (100), Expect = 4e-16 Identities = 50/50 (100%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 96 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 47 >seq2226 Length=96 Score = 91.5 bits (100), Expect = 4e-16 Identities = 50/50 (100%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 96 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509306304256