Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq71032 311 7e-80 seq71924 185 7e-42 >seq71032 Length=21228 Score = 311 bits (344), Expect = 7e-80 Identities = 1096/1698 (65%), Gaps = 39/1698 (2%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| ||||||||||| || || ||||| | ||| | || ||||||||||| ||| Sbjct 16141 TCGACGGTGAACTGGATGGCGTTGGCAGCGGGTCGGGTTCGCAGGTAGTACATGCCAGTC 16082 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || || || | ||| || ||||| ||||| || | | || || || |||||| Sbjct 16081 TTCAGACCCTTATTCCAGGCGTAGAAGTGCATGGACGTAAGCTTGGCGAAAGAAGGCTCG 16022 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 ||| | || || | || ||||| || || || ||| ||||| ||||||||| Sbjct 16021 CCCATGTAAATGTTGAGAGATTGACTTTGGTCAATATAAGCGGAGCGATCGGCAGCCATG 15962 Query 65258 TCAATGA-TACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCAA 65315 || || | ||| ||| | |||||||| || |||||||| || | | | | || Sbjct 15961 TCGATTACTAC-ACGCTGAGGAATCTCCCACACTGTCTTGTAAAG-CTTCTTGAGATCGT 15904 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375 || |||||||| ||| ||| || ||||| | || | | || | | Sbjct 15903 CAGGTATCTCCTCGATGCGCTGCACCGAACCGTTGTGGGCCACCAGCTTGTTCTTGAGGG 15844 Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 ||||||| || || ||| | | | || ||| |||| ||| | Sbjct 15843 CGGGGGACCACAGGCCGCGCTCCTGAAGGTCACGGAGCAGGTGCTCGTTGACGACGGTAA 15784 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 | || || | || | || || ||||||||||| ||| ||| || ||| | || Sbjct 15783 AGTCACCAGCAAGGATGCGGCGAGTGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGT 15724 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 | ||||| || || || | || || ||||| ||||| |||||||| | || ||||| | Sbjct 15723 TATTGCCGAGGATCTGAGAGGTCGAGGCAGTGGGCATAGGAGCGACGAGCAGCGAGTTCC 15664 Query 65556 GCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGT 65615 | |||| |||||| | |||||| |||||| | ||| |||| || Sbjct 15663 TGAGACCGTGACGAGCAATGTCGGCACGCAAAGTGTCCCAATCCCAG--CGGTC---CGA 15609 Query 65616 CGACATCCACGGGCCACATATC---CTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGA 65672 | | | ||| ||| | || ||| ||||| || | || || ||||| Sbjct 15608 GGGAA-CGACGTTCCAAAGGTCGGGCTGGAGCAGG---CCCTTGGAAGCGGGAGAACCCT 15553 Query 65673 GGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAA 65732 | || | ||| | || | ||||| || | | ||| || ||| || ||| Sbjct 15552 CGTAAGTCGAGTAGGCGCCTTGTTCCTTCGCCATCTCGCAGGAGGCGGTGAGGGCAGCAT 15493 Query 65733 AATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCA 65792 ||| ||||||||||| ||| || || || || || |||||| |||||| | || | Sbjct 15492 GATAGATGGTCTCGAAGATGGCGCGGTTCAGCTCGCGGGCCTCAGGGCTCTCCCAAGGGA 15433 Query 65793 TACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGAC 65852 | |||||| | || |||||| || || || || || || ||||| || | |||| Sbjct 15432 AGCGCATCAGCATGAATACGTCGGCGAGTCCCTGCACGCCTATGCCGATCGGCCTGTGAC 15373 Query 65853 GCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCA 65912 ||| ||| ||| | ||||| || || ||||| || ||||| || || | || | Sbjct 15372 GCATATTCGAATTGCGGGCCTCCGGCACGGGGTAATAGTTGATGTCAATGACCTTGTTAA 15313 Query 65913 AATTGCGTGTCACCACATGCACGATACGTCG--CAATTGTTCGAAATCAAAATGTTTAGG 65970 ||| || || || | || | ||||| || | | | ||||| || | Sbjct 15312 GATTCTTGGTTACGACCTTAACCA--CGTCGTGCAGCTTCTTGTGGTCAAA----TTCG- 15260 Query 65971 ACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGAC 66030 ||| | |||| | || ||||||||||||||||| || | |||||| || Sbjct 15259 -CGAGTCGCAGTGATG---------AATTTGGGAAGGGCAAGAGAGGCCAAGTTGCACAC 15210 Query 66031 AGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTAT 66090 ||| | ||||| || | || ||| || | || ||||||| || | | || Sbjct 15209 AGCCACTTCGTCGGGGGAAGTGAACTGGATCACCTCTGTGCACAAGTTGGACGACTGGAT 15150 Query 66091 GGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGG 66150 |||||| | | ||| || ||| |||||| ||||| | |||||||| | |||||| || Sbjct 15149 GGTGCCGAGGTGCTGCTGGTTAGACTTGCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGG 15090 Query 66151 AGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT 66210 |||||| ||||||| || ||||| | ||| | | ||| || | | |||||||| Sbjct 15089 AGTGCCCGTCTCAATCTGAGACTCGAGGATAGAGAACCAGAGTTCCTGAGCCTTCACGAC 15030 Query 66211 ACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCA 66270 ||| || | ||| | | ||||| | ||||| || || | || || ||||| Sbjct 15029 ACGGCGGGCGCGACCCTCCTGCTCGTAGCGCTCGTACAGCTGCTTAAACTCGTCTCCCCA 14970 Query 66271 TACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTC 66330 ||| |||||| || || || || || | |||||||| ||||| | | Sbjct 14969 AGTATCGAACAGACCCGGGGCCTCGTTGGGGCAGAAGAGCGACCAGTCACCGCCGTCACG 14910 Query 66331 TACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTG 66390 ||||| ||| || || || || | ||| | |||||||||||||||| || || || Sbjct 14909 CACACGCTCCATGAAAAGGTCGGGAACCCACAAACCGTAGAAGAGATCGCGAGCACGGTG 14850 Query 66391 CTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGG 66450 |||||| | |||||||| || | |||||||| || ||||| ||||||||||| || Sbjct 14849 CTCCTCCTTACCGTGATTCTTCTTGAGCTCGAGGAATTCGAAGATATCGGCATGCCAGGG 14790 Query 66451 TTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGC 66510 || ||||||||||| || | ||| | || || |||||||||||||| ||||||||||| Sbjct 14789 CTCAAGGTAGATGGCAAAGGCTCCCTTGCGCTTACCGCCACCTTGGTCAACGTAGCGAGC 14730 Query 66511 GACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTC 66570 | |||| | || || | |||||| | ||| || || || |||| ||||||||| Sbjct 14729 AGTGTCGTTGTATACGCGAAGCATCGGAATGAGACCATTCGAGGTGCCGTTGGTGCCGCG 14670 Query 66571 GATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTT 66630 |||| || || || || ||| ||| || || ||||| || || | ||| Sbjct 14669 GATGTAAGAGTTGGAAGCTCGGATGCGGTGTACAGCAAGGCCGATACCCCCAGCGGACTT 14610 Query 66631 CGAGATGGCAGCACAAT--CGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTG 66688 |||||| ||||| | | | |||| | | || || ||||| ||||| | || Sbjct 14609 AGAGATGAGGGCACACTGCTTGAGAGTGTC--GTAGATCCCTTCAATTGAGTCCTCTTTC 14552 Query 66689 ATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTG 66748 ||||| |||||| |||| ||| ||| || || || ||| |||| ||||||||| Sbjct 14551 ATGGTAAGGAGGAAGCACGAAGAAAGCTGCGGGCGAGGAGTGCCGGCATTGAAGAGGGTA 14492 Query 66749 GGTGTAGCGTGCGTAAAG 66766 || |||||||| || ||| Sbjct 14491 GGGGTAGCGTGGGTGAAG 14474 >seq71924 Length=31871 Score = 185 bits (204), Expect = 7e-42 Identities = 583/889 (66%), Gaps = 26/889 (3%) Strand=Plus/Minus Query 61053 TCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGA 61112 ||||||||| | |||||||| | | || || ||| | ||||| ||||| || Sbjct 9252 TCGTTTCGTGCTATTCCCCATTAATCACCAGCGCATCTGGGAGTTCTACAAGAAGGCTGA 9193 Query 61113 AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG-C 61171 |||||||||||||| | || || |||||| | || ||| ||||| |||||| | Sbjct 9192 GGCTTCCTTCTGGACTGCCGAAGAAGTCGATCTAGGCAGCGACTTGAATCACTGGGCCTC 9133 Query 61172 GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGG 61231 | | | || | || | || |||||||| || ||| |||| ||||| || ||| | Sbjct 9132 GCTCACTAAG-GACGAGAAGCACTTCATTAAGCACGTGCTGGCCTTCTTCGCGGCTAGTG 9074 Query 61232 ACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGG 61291 ||||||| || ||||||| | | || ||| | |||| |||||||| | |||| Sbjct 9073 ACGGTATTGTTGCTGAGAATCTCGCTGTTCGCTTCATGAAGGAAGTGCAAGTTCCCGAGG 9014 Query 61292 CGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTG 61351 ||||||| ||||| || ||||| || ||||| || || | |||||||||||||| Sbjct 9013 CGCGTTGCTTCTATGGATTCCAAATCGCCATTGAAAACATTCACTCGGAGATGTATTCCC 8954 Query 61352 TTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGAT----TGTTCAATGCC 61407 |||| ||||| || ||| ||| ||| | | || ||| ||| | ||| ||| Sbjct 8953 TTCTTATCGACACCTACGTCAAGGA----CCCTATCGAGAAGGATCGCCTCTTCCGCGCC 8898 Query 61408 ATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCAG 61466 ||||| || | || | || || ||| || || ||||| |||| |||||| | || Sbjct 8897 ATCGAAACTGTGCCTTCAGTCAAAAAGAAGGCCGAGTGGGCTATCAAGTGGATCGGCAAG 8838 Query 61467 TACAAC--GGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTT 61524 | | || || || | ||| || | | | ||||| | || ||||| | || Sbjct 8837 GAGGGCCAGGAGACCTTCGCTGAGCGTCTCATTGGTTTTGCTGCCGTAGAGGGCATTTTC 8778 Query 61525 TTC-AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCT 61583 ||| | | | | | || | | ||||||||| ||||||| || || || |||||||| || Sbjct 8777 TTCTCGGGCAGCTTCTG-CTCCATCTTTTGGCTGAAGAAGCGAGGCCTCATGCCCGGACT 8719 Query 61584 GACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTT 61643 |||| ||| ||| | || || |||||||| | || || || ||||| || Sbjct 8718 CTCCTTTTCCAACGAGCTCATCAGCCGTGACGAGGGTCTTCACTGCGACTTTGC---TTG 8662 Query 61644 GCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGA-GATTGTTC 61702 || || | || || || || || ||| ||| || || ||| ||| Sbjct 8661 TCTCCTCTATAGCATGCTCGTCAACAAACCCTCGCCCGAG-GTTCCTAAGACGATCATTC 8603 Query 61703 GTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCG 61762 ||||| || || || |||| || | || || || | ||||| | ||||||| Sbjct 8602 TCGAGGCTGTCGAGATAGAGAAGGAGTTCGTCACCGAGTCTCTCCCCGTGGCTCTCATCG 8543 Query 61763 GCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG 61822 ||||||| | || |||| ||||| || ||||| || ||||||||||| | || | Sbjct 8542 GCATGAACGCCGAGCTCATGTGCCAGTACATCGAATTCGTCGCCGACCGTCTCCTCGTGG 8483 Query 61823 AT-TTGG--GTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGA 61879 | |||| || ||||| || | || || ||||| || | ||||| | | Sbjct 8482 CTCTTGGCTGTGAGAAGCATTTCCACAA---GACCAACCCCTTCCCCTGGATGGAGCTTA 8426 Query 61880 TTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 | ||||| || |||||||| || || |||||| ||||| ||||| || Sbjct 8425 TCTCGCTCGAGGGCAAGACCAACTTCTTCGAGCGTCGTGTTGGCGAGTA 8377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397217142637040