Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq85558 86.0 3e-15 seq80948 86.0 3e-15 seq11149 86.0 3e-15 seq72181 82.4 4e-14 seq21749 82.4 4e-14 seq88170 80.6 1e-13 seq65802 80.6 1e-13 seq54056 80.6 1e-13 seq52240 80.6 1e-13 seq47234 80.6 1e-13 seq29871 80.6 1e-13 seq25720 80.6 1e-13 seq23018 80.6 1e-13 seq9961 80.6 1e-13 seq423 80.6 1e-13 seq47272 75.2 6e-12 seq56474 71.6 8e-11 seq19650 71.6 8e-11 >seq85558 Length=127 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || ||| ||| || |||||||| ||||| |||||||||||||||||||||| |||| Sbjct 38 AACGTCTCCCAATCGCTGGTCGGCATTGTTTATGGTTAAGACTACGACGGTATCTAATCG 97 Query 111 TCTTCGA 117 ||||||| Sbjct 98 TCTTCGA 104 >seq80948 Length=75 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || ||| ||| || |||||||| ||||| |||||||||||||||||||||| |||| Sbjct 7 AACGTCTCCCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCG 66 Query 111 TCTTCGA 117 ||||||| Sbjct 67 TCTTCGA 73 >seq11149 Length=127 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || ||| ||| || |||||||| ||||| |||||||||||||||||||||| |||| Sbjct 47 AACGTCTCCCAATCGCTTGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCG 106 Query 111 TCTTCGA 117 ||||||| Sbjct 107 TCTTCGA 113 >seq72181 Length=127 Score = 82.4 bits (90), Expect = 4e-14 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| ||| || |||||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 127 CCCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 68 >seq21749 Length=127 Score = 82.4 bits (90), Expect = 4e-14 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| ||| || |||||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 126 CCCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 67 >seq88170 Length=127 Score = 80.6 bits (88), Expect = 1e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || ||| ||| || |||||||| ||||| |||||||||||| ||||||||| |||| Sbjct 19 AACGTCTCCCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACTACGGTATCTAATCG 78 Query 111 TCTTCGA 117 ||||||| Sbjct 79 TCTTCGA 85 >seq65802 Length=127 Score = 80.6 bits (88), Expect = 1e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || ||| ||| || ||| |||| ||||| |||||||||||||||||||||| |||| Sbjct 43 AACGTCTCCCAATCGCTGGTCTGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCG 102 Query 111 TCTTCGA 117 ||||||| Sbjct 103 TCTTCGA 109 >seq54056 Length=127 Score = 80.6 bits (88), Expect = 1e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||| || |||||||| ||||| |||||||||||||||||||||| |||| Sbjct 73 AACGTCTCCAAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCG 14 Query 111 TCTTCGA 117 ||||||| Sbjct 13 TCTTCGA 7 >seq52240 Length=127 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||| || |||||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 127 CCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 69 >seq47234 Length=127 Score = 80.6 bits (88), Expect = 1e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || ||| ||| || || ||||| ||||| |||||||||||||||||||||| |||| Sbjct 84 AACGTCTCCCAATCGCTGGTAGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCG 25 Query 111 TCTTCGA 117 ||||||| Sbjct 24 TCTTCGA 18 >seq29871 Length=127 Score = 80.6 bits (88), Expect = 1e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || ||| ||| || |||||||| ||||| |||||||||||||||||||| | |||| Sbjct 117 AACGTCTCCCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATATAATCG 58 Query 111 TCTTCGA 117 ||||||| Sbjct 57 TCTTCGA 51 >seq25720 Length=127 Score = 80.6 bits (88), Expect = 1e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||| || |||||||| ||||| |||||||||||||||||||||| |||| Sbjct 71 AACGTCTACCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCG 12 Query 111 TCTTCGA 117 ||||||| Sbjct 11 TCTTCGA 5 >seq23018 Length=127 Score = 80.6 bits (88), Expect = 1e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || | | ||| || |||||||| ||||| |||||||||||||||||||||| |||| Sbjct 72 AACGTCTCACAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCG 13 Query 111 TCTTCGA 117 ||||||| Sbjct 12 TCTTCGA 6 >seq9961 Length=127 Score = 80.6 bits (88), Expect = 1e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || ||| ||| || |||||||| ||||| ||||||||||||||||||||| |||| Sbjct 31 AACGTCTCCCAATCGCTGGTCGGCATGGTTTATTGTTAAGACTACGACGGTATCTAATCG 90 Query 111 TCTTCGA 117 ||||||| Sbjct 91 TCTTCGA 97 >seq423 Length=127 Score = 80.6 bits (88), Expect = 1e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || ||| ||| || |||||||| ||||| ||||||||||||||| |||||| |||| Sbjct 16 AACGTCTCCCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACTGTATCTAATCG 75 Query 111 TCTTCGA 117 ||||||| Sbjct 76 TCTTCGA 82 >seq47272 Length=65 Score = 75.2 bits (82), Expect = 6e-12 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 69 GTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 1 GTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 49 >seq56474 Length=127 Score = 71.6 bits (78), Expect = 8e-11 Identities = 44/47 (94%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 71 CGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 127 CGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 81 >seq19650 Length=64 Score = 71.6 bits (78), Expect = 8e-11 Identities = 44/47 (94%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 71 CGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 1 CGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278118866460