Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq57498 80.6 2e-13 seq11309 80.6 2e-13 seq1907 80.6 2e-13 seq22035 78.8 6e-13 seq41220 77.0 2e-12 seq88055 75.2 7e-12 seq77342 75.2 7e-12 seq76632 75.2 7e-12 seq72534 75.2 7e-12 seq70423 75.2 7e-12 seq69785 75.2 7e-12 seq60113 75.2 7e-12 seq54580 75.2 7e-12 seq36740 75.2 7e-12 seq21591 75.2 7e-12 seq16664 75.2 7e-12 seq6830 75.2 7e-12 seq4898 75.2 7e-12 seq58500 71.6 8e-11 >seq57498 Length=127 Score = 80.6 bits (88), Expect = 2e-13 Identities = 59/66 (89%), Gaps = 2/66 (3%) Strand=Plus/Minus Query 59 CATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACG 118 || |||| ||||||| | ||||||||||| |||||||||||||||||||||||| ||||| Sbjct 65 CAATTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACG 8 Query 119 CAAGCT 124 | |||| Sbjct 7 CGAGCT 2 >seq11309 Length=127 Score = 80.6 bits (88), Expect = 2e-13 Identities = 57/63 (90%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| |||||| | |||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 53 TTCAATCGGTA-TGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 110 Query 122 GCT 124 ||| Sbjct 111 GCT 113 >seq1907 Length=65 Score = 80.6 bits (88), Expect = 2e-13 Identities = 57/63 (90%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 2 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 59 Query 122 GCT 124 ||| Sbjct 60 GCT 62 >seq22035 Length=127 Score = 78.8 bits (86), Expect = 6e-13 Identities = 56/62 (90%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 63 TCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAG 122 ||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| || Sbjct 1 TCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAG 58 Query 123 CT 124 || Sbjct 59 CT 60 >seq41220 Length=127 Score = 77.0 bits (84), Expect = 2e-12 Identities = 55/61 (90%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 69 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 126 Query 122 G 122 | Sbjct 127 G 127 >seq88055 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | |||||| |||| |||||||||||||||||||||||| |||||| | Sbjct 44 TTCAATCGGTAGGA-GCGACGTGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 101 Query 122 GCT 124 ||| Sbjct 102 GCT 104 >seq77342 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||| ||||||||||||| |||||| | Sbjct 28 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGTGCAGGGACGTAAT-CAACGCGA 85 Query 122 GCT 124 ||| Sbjct 86 GCT 88 >seq76632 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||| | |||||||||||||||||||||||| |||||| | Sbjct 41 TTCAATCGGTAGGA-GCGACGGGCTGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 98 Query 122 GCT 124 ||| Sbjct 99 GCT 101 >seq72534 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 53/58 (91%), Gaps = 2/58 (3%) Strand=Plus/Minus Query 67 TCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| |||| Sbjct 127 TCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAGCT 72 >seq70423 Length=66 Score = 75.2 bits (82), Expect = 7e-12 Identities = 53/58 (91%), Gaps = 2/58 (3%) Strand=Plus/Minus Query 67 TCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| |||| Sbjct 66 TCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAGCT 11 >seq69785 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| ||||||||||||||| |||||||| |||||| | Sbjct 23 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGTGACGTAAT-CAACGCGA 80 Query 122 GCT 124 ||| Sbjct 81 GCT 83 >seq60113 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| || |||| | ||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 57 TTCAATCTGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 114 Query 122 GCT 124 ||| Sbjct 115 GCT 117 >seq54580 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||| ||||||||| |||||| | Sbjct 24 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCATGGACGTAAT-CAACGCGA 81 Query 122 GCT 124 ||| Sbjct 82 GCT 84 >seq36740 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||| ||||||| |||||| | Sbjct 22 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGTACGTAAT-CAACGCGA 79 Query 122 GCT 124 ||| Sbjct 80 GCT 82 >seq21591 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 53/58 (91%), Gaps = 2/58 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGC 119 |||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| Sbjct 57 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGC 2 >seq16664 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||| ||||| |||||||||||||||||||||||| |||||| | Sbjct 45 TTCAATCGGTAGGA-GCGACTGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 102 Query 122 GCT 124 ||| Sbjct 103 GCT 105 >seq6830 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 53/58 (91%), Gaps = 2/58 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGC 119 |||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| Sbjct 70 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGC 125 >seq4898 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| ||||||||| |||||||||||||| |||||| | Sbjct 29 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAATGGCAGGGACGTAAT-CAACGCGA 86 Query 122 GCT 124 ||| Sbjct 87 GCT 89 >seq58500 Length=67 Score = 71.6 bits (78), Expect = 8e-11 Identities = 46/49 (94%), Gaps = 1/49 (2%) Strand=Plus/Minus Query 76 AGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||| |||||||||||||||||||||||| |||||| |||| Sbjct 66 AGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAGCT 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300496246520