Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq89912 104 4e-20 seq84570 102 1e-19 seq30111 100 5e-19 seq96562 98.7 2e-18 seq60360 98.7 2e-18 seq41148 96.9 6e-18 seq59191 95.1 2e-17 seq10645 87.8 3e-15 seq81549 86.0 1e-14 seq52122 86.0 1e-14 seq23402 86.0 1e-14 seq20502 86.0 1e-14 seq87945 82.4 1e-13 seq92830 80.6 4e-13 seq73560 80.6 4e-13 seq82603 78.8 2e-12 seq23673 78.8 2e-12 seq77457 77.0 5e-12 seq61392 77.0 5e-12 seq51377 77.0 5e-12 seq14231 77.0 5e-12 seq11860 77.0 5e-12 >seq89912 Length=127 Score = 104 bits (114), Expect = 4e-20 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| |||||||| ||| | || | || | |||| Sbjct 4 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCTTTGGCCGAAAGGCCAGT 61 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||||||| |||||||||||||||||||||||| |||||||| ||| | Sbjct 62 GATGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 121 Query 121 G 121 | Sbjct 122 G 122 >seq84570 Length=127 Score = 102 bits (112), Expect = 1e-19 Identities = 97/119 (82%), Gaps = 4/119 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCA-G 59 ||||||||||||| | || |||||| |||||||| ||| | || | || ||||| | Sbjct 118 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCTTTGGCCGAA-AGGCAAG 62 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 || | |||||||||||||| |||||||||||||||||||||||| |||||||| ||| Sbjct 61 TGAGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGC 3 >seq30111 Length=127 Score = 100 bits (110), Expect = 5e-19 Identities = 94/117 (80%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| |||||||| ||| | || | || | |||| Sbjct 115 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCTTTGGCCGAAATGCCAGT 58 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATG 117 | | |||||||||||||| |||||||||||||||||||||||| |||||||| || Sbjct 57 GAGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTG 1 >seq96562 Length=4587 Score = 98.7 bits (108), Expect = 2e-18 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | |||||| |||||||||| ||| | || | | | |||| Sbjct 527 GTACGAGAGGAACAGTC-AATTCA-AATAATTGGTATTTTCCTTTGGCCAAAAGGCCAGT 584 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||||||| |||||||||||||||||||||||| |||||||| ||| | Sbjct 585 GGGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 644 Query 121 G 121 | Sbjct 645 G 645 >seq60360 Length=127 Score = 98.7 bits (108), Expect = 2e-18 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| |||||||| ||| | || | || | |||| Sbjct 6 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCTTTGGCCGAAAGGCCAGT 63 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||| |||||||| ||| | Sbjct 64 TAGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 123 Query 121 G 121 | Sbjct 124 G 124 >seq41148 Length=127 Score = 96.9 bits (106), Expect = 6e-18 Identities = 90/112 (80%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| |||||||| ||| | || | || | |||| Sbjct 110 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCTTTGGCAGAAAGGCCAGT 53 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | | |||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 52 GAGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAAT 1 >seq59191 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 83/102 (81%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79 ||||||| |||||||| ||| | || | || | ||||| | |||||||||||||| Sbjct 4 ATTCAGA-TAATTGGTATTTTCCTTTGGCCGAAAGGCCAGTGAGGAGAAGCTACCATCTG 62 Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 ||||||||||||||||||||||||| |||||||| ||| || Sbjct 63 TTGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTAG 104 >seq10645 Length=127 Score = 87.8 bits (96), Expect = 3e-15 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| |||||||| ||| | || | || | |||| Sbjct 103 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCATTTGGCCGAAAGGCCAGT 46 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAG 105 | | |||||||||||||| |||||||||||||||||||||||| Sbjct 45 GAGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAG 1 >seq81549 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 81/102 (79%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79 ||||||| |||||||| ||| | || | || | ||||| | ||||||||||||| Sbjct 122 ATTCAGA-TAATTGGTATTTTCCTTTGGCCGAAAGGCCAGTGAGGAGAAGCTACCATCTT 64 Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 |||||||||||||||||||||||| |||||||| ||| || Sbjct 63 TGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTAG 22 >seq52122 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 86/109 (79%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| |||||||| ||| | | | || | |||| Sbjct 21 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCTTTTGCCGAAAGGCCAGT 78 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAG 109 | | |||||||||||||| |||||||||||||||||||||||| ||| Sbjct 79 GAGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAG 127 >seq23402 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 81/102 (79%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79 ||||||| |||||||| ||| | || | || | ||||| | |||||||||||||| Sbjct 3 ATTCAGA-TAATTGGTATTTTCCTTTGGCCGAAAGGCCAGTGAGGAGAAGCTACCATCTG 61 Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 ||||||||||||||||||||||| |||||||| ||| || Sbjct 62 TGTGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTAG 103 >seq20502 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 81/102 (79%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79 ||||||| |||||||| ||| | || | || | ||||| | |||||||| ||||| Sbjct 117 ATTCAGA-TAATTGGTATTTTCCTTTGGCCGAAAGGCCAGTGAGGAGAAGCTACAATCTG 59 Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 |||||||||||||||||||||||| |||||||| ||| || Sbjct 58 TGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTAG 17 >seq87945 Length=127 Score = 82.4 bits (90), Expect = 1e-13 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 ||||||||| ||| | || | || | ||||| | |||||||||||||| ||||| Sbjct 2 ATAATTGGTATTTTCCTTTGGCCGAAAGGCCAGTGAGGAGAAGCTACCATCTGTGGGATT 61 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 || |||||||||||||||| |||||||| ||| || Sbjct 62 ATTGCTGAACGCCTCTAAGCCAGAATCCGTGCTAG 96 >seq92830 Length=65 Score = 80.6 bits (88), Expect = 4e-13 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 58 AGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATG 117 |||| | |||||||||||||| |||||||||||||||||||||||| |||||||| || Sbjct 65 AGTGAGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTG 6 Query 118 CCAG 121 | || Sbjct 5 CTAG 2 >seq73560 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG-AAC 124 |||||||||||||| |||||||||||||||||||||||| |||||||| ||| || ||| Sbjct 7 GAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTAGCAAC 66 Query 125 G 125 | Sbjct 67 G 67 >seq82603 Length=67 Score = 78.8 bits (86), Expect = 2e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116 ||||| | |||||||||||||| |||||||||||||||||||||||| |||||||| | Sbjct 61 CAGTGAGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGT 2 Query 117 G 117 | Sbjct 1 G 1 >seq23673 Length=65 Score = 78.8 bits (86), Expect = 2e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 |||||||||||||| |||||||||||||||||||||||| |||||||| ||| || Sbjct 59 GAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTAG 4 >seq77457 Length=64 Score = 77.0 bits (84), Expect = 5e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 ||||| | |||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 57 CAGTGAGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATC 1 >seq61392 Length=127 Score = 77.0 bits (84), Expect = 5e-12 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116 ||||| | |||||||||||||| |||||||||||||||||||||||| || ||||| | Sbjct 12 CAGTGAGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCATAATCCGT 71 Query 117 GCCAG 121 || || Sbjct 72 GCTAG 76 >seq51377 Length=127 Score = 77.0 bits (84), Expect = 5e-12 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116 ||||| | |||||||||||||| ||||||||||| |||||||||||| |||||||| | Sbjct 28 CAGTGAGGAGAAGCTACCATCTGTGGGATTATGGCTTAACGCCTCTAAGCCAGAATCCGT 87 Query 117 GCCAG 121 || || Sbjct 88 GCTAG 92 >seq14231 Length=127 Score = 77.0 bits (84), Expect = 5e-12 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116 ||||| | |||||||||||||| ||||||||||||||||| |||||| |||||||| | Sbjct 106 CAGTGAGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCATCTAAGCCAGAATCCGT 47 Query 117 GCCAG 121 || || Sbjct 46 GCTAG 42 >seq11860 Length=127 Score = 77.0 bits (84), Expect = 5e-12 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116 ||||| | |||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 121 CAGTGAGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCAGT 62 Query 117 GCCAG 121 || || Sbjct 61 GCTAG 57 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818345181696