Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq24997 141 4e-31 seq3574 96.9 1e-17 seq3693 93.3 2e-16 seq5394 80.6 1e-12 seq6461 78.8 4e-12 >seq24997 Length=21011 Score = 141 bits (156), Expect = 4e-31 Identities = 137/174 (79%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 511 TGCACCATCGACCGATCCTGATGT-CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGG 569 ||||||| || |||| | ||| | ||| || || |||||| ||||| || |||||| Sbjct 19694 TGCACCACCGGCCGACCTGGATTTTCTT--GAAGGGTTTGAGCTAGAGCGTATTTGTTGG 19751 Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 |||||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||| Sbjct 19752 GACCCGAAAGATTGTGAACTATGGGTGACCAGGACGAAGCCAGAGGAAACTCTGGTGGAG 19811 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | || || | | ||| ||||||||||| || || | ||| ||||||||||| Sbjct 19812 GTCCGAAGTGATACTGACGTGCAAATCGTTCATCTGAGTTGCCTATAGGGGCGA 19865 Score = 138 bits (152), Expect = 5e-30 Identities = 112/135 (83%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 18992 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAAT 19051 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 |||| || |||||||||||||| ||||||| |||| ||||||||||||| |||||| Sbjct 19052 ATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTG 19111 Query 157 GAAAGAGAGTTAAAA 171 ||||||||| |||| Sbjct 19112 AAAAGAGAGTCAAAA 19126 >seq3574 Length=132 Score = 96.9 bits (106), Expect = 1e-17 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 |||||||||| || || | | || ||||||||| ||||||||||||||||||||||| Sbjct 15 GATGCTGGCGGAACGGCGCTGATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAC 74 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAG 484 | |||||||| ||||| |||||| | ||||| | |||||| Sbjct 75 GTGCGCGAGTGTCCGGGTGGCAAACCTGGGCGCGGAGTGAAAG 117 >seq3693 Length=126 Score = 93.3 bits (102), Expect = 2e-16 Identities = 76/91 (84%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 109 AGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTA 168 |||||||||||| ||||||| |||| ||||||||||||| |||||| |||||||| | Sbjct 1 AGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAG-TC 59 Query 169 AAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||| | |||||||||| ||||||||| Sbjct 60 AAAAGTGCTTGAAATTGTTAGGAGGGAAGCG 90 >seq5394 Length=64 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 109 AGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTA 168 |||||||||||| ||||||| |||| ||||||||||||| |||||| ||||||||| | Sbjct 64 AGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCA 5 Query 169 AAAA 172 |||| Sbjct 4 AAAA 1 >seq6461 Length=65 Score = 78.8 bits (86), Expect = 4e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 109 AGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTA 168 |||||||||||| ||||||| |||| ||||||||||||| |||||| ||||||||| | Sbjct 3 AGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCA 62 Query 169 AAA 171 ||| Sbjct 63 AAA 65 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079438267400