Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq10824 105 2e-20 seq3973 89.7 1e-15 seq10924 86.0 2e-14 >seq10824 Length=455 Score = 105 bits (116), Expect = 2e-20 Identities = 236/345 (68%), Gaps = 21/345 (6%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| ||||||||||| |||||||||||| || | || Sbjct 37 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 96 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAG--ACAGGT 120 ||| |||| ||| | | |||||| |||||| ||||| ||| || | |||| || | Sbjct 97 AAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTATTAAGTTTCAAG- 155 Query 121 GTGAAATCCCCGGGCTTAACCTGG----GAAT-TGCATTTGTGACTGCACGACTAGAGTG 175 || ||| | ||| | | ||| | | ||| ||| | ||||||| Sbjct 156 GTAAAA-------ATTAAACATAGAGTTTAATATCCTTTTAATACTAATAGGCTAGAGTT 208 Query 176 T-GTCAGAGGGGGGTGGA-ATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAA 233 | | ||| | || | ||| | ||||| ||||||| | ||||| | |||| Sbjct 209 TATTGGGAGATAGCTGAACATT--AAGTGTAAAGGTGAAATTTTTCGATATTTAAAGGAC 266 Query 234 CACCAAT-GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGG 292 |||| ||||||||| || || | | |||||| || | |||| ||||| | || Sbjct 267 ATGCAATAGGCGAAGGCTGCTATCT-ACTTTATACTGACACTGAGGCACAAAAGCATAGG 325 Query 293 GAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 || |||||||||||||| |||||||||||| | ||||| | |||| Sbjct 326 GATCAAACAGGATTAGAGACCCTGGTAGTCTATGCCCTGACCGAT 370 >seq3973 Length=124 Score = 89.7 bits (98), Expect = 1e-15 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 241 GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 300 ||||||||| || || ||| |||||| || | |||| ||||| |||||| ||||| Sbjct 1 GGCGAAGGCTGCTATCTACTTTAATACTGACACTGAGGCACAAAAGCATGGGGATCAAAC 60 Query 301 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||| |||||||||||||| ||||| | |||| Sbjct 61 AGGATTAGAGACCCTGGTAGTCCATGCCCTGACCGAT 97 >seq10924 Length=189 Score = 86.0 bits (94), Expect = 2e-14 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| || || | |||| | | |||||| ||||||||||| |||||||||||| || | || Sbjct 148 TACTTGGAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 89 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT 107 | |||| ||| | | |||||| |||||| ||||| ||| |||| Sbjct 88 TGGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGTT 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289262279552