Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq13598 122 2e-25 seq12149 116 9e-24 seq3226 113 1e-22 seq2937 87.8 5e-15 seq25002 77.0 8e-12 seq10012 77.0 8e-12 seq11525 75.2 3e-11 >seq13598 Length=127 Score = 122 bits (134), Expect = 2e-25 Identities = 103/127 (81%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 18 TTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCC 77 |||||||| | || ||||||||| || ||||||||| | ||||||| || Sbjct 1 TTCACAGCAAATTTAATTTCACTAGGTTAATACTGGAGACAGTAGGGAAGTCGTTACACC 60 Query 78 ATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTT 137 ||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 61 ATTTATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTT 120 Query 138 ACGGCCG 144 || |||| Sbjct 121 ACAGCCG 127 >seq12149 Length=90 Score = 116 bits (128), Expect = 9e-24 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 14 TCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGAC 73 Query 128 CGTTATTGTTACGGCCG 144 |||||| ||||| |||| Sbjct 74 CGTTATGGTTACAGCCG 90 >seq3226 Length=84 Score = 113 bits (124), Expect = 1e-22 Identities = 67/70 (96%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 83 TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGC 142 |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || Sbjct 2 TGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGC 61 Query 143 CGCCGTTTAC 152 |||||||||| Sbjct 62 CGCCGTTTAC 71 >seq2937 Length=127 Score = 87.8 bits (96), Expect = 5e-15 Identities = 102/134 (76%), Gaps = 9/134 (7%) Strand=Plus/Minus Query 103 ACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCG 162 ||||||||||||||||||||||||||||||| ||||| |||||||||||| | | || Sbjct 127 ACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTGAGATTTAT 68 Query 163 ATCAAGAGCTTCGCGTTAGCTAACCCCAT-CAATTAACCTTCCGGCACCGGGCAGGCGTC 221 || | | || ||| ||| || || | || ||| | |||||||||||| ||| Sbjct 67 ATTTA-----TGGCATTA-CTA--CCAATCCTTTTTGTCTTTCAGCACCGGGCAGGTGTC 16 Query 222 ACACCCTATACGTC 235 | ||||||||| || Sbjct 15 AGACCCTATACATC 2 >seq25002 Length=997 Score = 77.0 bits (84), Expect = 8e-12 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 117 ||||||| |||||| |||||||||||||| |||||||||||||||||||| Sbjct 351 TCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCT 400 >seq10012 Length=95 Score = 77.0 bits (84), Expect = 8e-12 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 117 ||||||| |||||| |||||||||||||| |||||||||||||||||||| Sbjct 50 TCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCT 1 >seq11525 Length=98 Score = 75.2 bits (82), Expect = 3e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 206 GCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTT 265 |||||||||||| |||| ||||||||| || || | || ||||||| ||||||||| Sbjct 2 GCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCAGAGTCCTGTGTTTT 61 Query 266 TAATAAACAGTCGC 279 || ||||||||||| Sbjct 62 TAGTAAACAGTCGC 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260469821696