Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq3226 113 1e-22 seq13598 109 1e-21 seq12149 109 1e-21 seq2937 109 1e-21 seq3713 104 5e-20 seq11525 96.9 7e-18 seq10518 87.8 4e-15 seq10012 75.2 2e-11 >seq3226 Length=84 Score = 113 bits (124), Expect = 1e-22 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 77 TGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGC 136 ||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| || Sbjct 2 TGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGC 61 Query 137 CGCCGTTTACTG 148 |||||||||||| Sbjct 62 CGCCGTTTACTG 73 >seq13598 Length=127 Score = 109 bits (120), Expect = 1e-21 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 26 AATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCG 85 |||||||| || || | |||||||| || ||||||| || || ||| ||||| Sbjct 15 AATTTCACTAGGTTAATACTGGAGACAGTAGGGAAGTCGTTACACCATTTATGCAGGTCG 74 Query 86 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCG 138 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 75 GAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCG 127 >seq12149 Length=90 Score = 109 bits (120), Expect = 1e-21 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| |||||||||| ||||||||||||||||||||||||||| Sbjct 11 AAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAG 70 Query 119 GACCGTTATAGTTACGGCCG 138 ||||||||| ||||| |||| Sbjct 71 GACCGTTATGGTTACAGCCG 90 >seq2937 Length=127 Score = 109 bits (120), Expect = 1e-21 Identities = 105/134 (78%), Gaps = 7/134 (5%) Strand=Plus/Minus Query 97 ACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAA 156 ||||||||||||||||||||||||||||||| ||||| |||||||||||||| | ||| Sbjct 127 ACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTGAGATTTAT 68 Query 157 GTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCA 216 || | || ||| || || |||| || ||| |||||||||||||| |||| Sbjct 67 ATTTATGGC----ATTACT---ACCAATCCTTTTTGTCTTTCAGCACCGGGCAGGTGTCA 15 Query 217 GCTCCTATACATCG 230 | ||||||||||| Sbjct 14 GACCCTATACATCG 1 >seq3713 Length=127 Score = 104 bits (114), Expect = 5e-20 Identities = 102/129 (79%), Gaps = 7/129 (5%) Strand=Plus/Minus Query 106 TTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGC 165 |||||||||||||||||||||| ||||| |||||||||||||| | ||| |||| || Sbjct 127 TTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTGAGATTTATATTCATGGC 68 Query 166 TTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATA 225 ||| |||| || |||| || ||| |||||||||||||| ||||| |||||| Sbjct 67 ----ATT--TCTACCA-ATCCTTTTTGTCTTTCAGCACCGGGCAGGTGTCAGACCCTATA 15 Query 226 CATCGTCTT 234 |||||| || Sbjct 14 CATCGTTTT 6 >seq11525 Length=98 Score = 96.9 bits (106), Expect = 7e-18 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 199 AGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTT 258 ||||||||||||| ||||| |||||||||||| || | |||||||||| ||||||||| Sbjct 1 AGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCAGAGTCCTGTGTTT 60 Query 259 TTGGTAAACAGTCGCT 274 || ||||||||||||| Sbjct 61 TTAGTAAACAGTCGCT 76 >seq10518 Length=127 Score = 87.8 bits (96), Expect = 4e-15 Identities = 99/132 (75%), Gaps = 7/132 (5%) Strand=Plus/Minus Query 129 GTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCC 188 ||||| |||||||||||||| | ||| |||| || ||| || || |||| Sbjct 126 GTTACAGCCGCCGTTTACTGAGATTTATATTCATGGC----ATTACT---ACCAATCCTT 74 Query 189 TTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAA 248 || ||| ||||||||||||| ||||| |||||||||||| || | |||||||||| Sbjct 73 TTTGTCTTTTAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCAGAG 14 Query 249 ACCTGTGTTTTT 260 ||||||||||| Sbjct 13 TCCTGTGTTTTT 2 >seq10012 Length=95 Score = 75.2 bits (82), Expect = 2e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 26 AATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCG 85 |||||||| || || | |||||||| || ||||||| || ||| ||| ||||| Sbjct 86 AATTTCACTAGGTTAATACTGGAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCG 27 Query 86 GAACTTACCCGACAAGGAATTTCGCT 111 ||||| |||||||||||||||||||| Sbjct 26 GAACTCACCCGACAAGGAATTTCGCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062121778688