Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq10824 178 3e-42 seq10924 127 5e-27 seq3973 105 2e-20 >seq10824 Length=455 Score = 178 bits (196), Expect = 3e-42 Identities = 253/349 (72%), Gaps = 19/349 (5%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || |||| Sbjct 37 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 96 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAG--TCAGAG 118 || ||||| || | | |||||| ||||||||||||||||||| || ||||| ||| || Sbjct 97 AAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTATTAAGTTTCA-AG 155 Query 119 GTGAAAGGCTATGGCTCAACCCCGGG-----ACTGCTTTTGAAACTGCAGGGCTAGAGTG 173 || ||| || | ||| | | | ||||| | ||| ||||||||| Sbjct 156 GTAAAA----AT---TAAACATAGAGTTTAATATCCTTTTAATACTAATAGGCTAGAGTT 208 Query 174 CAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGA-AC 232 | || | || ||| |||||| |||||||| | |||||| |||| | Sbjct 209 TATTGGGAGATAGCTGAACATTAAGTGTAAAGGTGAAATTTTTCGATATTTAAAGGACAT 268 Query 233 ACCAGTGGCGAAGGCGGCTTGCTGGACTGTA-ACTGACACTGAGGCTCGAAAGCGTGGGG 291 | | ||||||||| ||| || ||| || |||||||||||||| | ||||| | ||| Sbjct 269 GCAATAGGCGAAGGCTGCTATCT--ACTTTATACTGACACTGAGGCACAAAAGCATAGGG 326 Query 292 AGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATA 340 | |||||||||||||| |||||||||||| | ||| | | ||||||||| Sbjct 327 ATCAAACAGGATTAGAGACCCTGGTAGTCTATGCCCTGACCGATGAATA 375 >seq10924 Length=189 Score = 127 bits (140), Expect = 5e-27 Identities = 98/114 (86%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 TACTTG-AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 59 |||||| ||||| |||||| | |||||| ||||||||||| |||||||||||| || ||| Sbjct 148 TACTTGGAGGAG-AAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGG 90 Query 60 CTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 || | ||||| || | | |||||| |||||||||||||||||||||| |||||| Sbjct 89 CTGGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGTTTATTAAGT 36 >seq3973 Length=124 Score = 105 bits (116), Expect = 2e-20 Identities = 87/104 (84%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 239 GGCGAAGGCGGCTTGCTGGACTGTAA--CTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296 ||||||||| ||| || ||| ||| ||||||||||||| | ||||| |||||| ||| Sbjct 1 GGCGAAGGCTGCTATCT--ACTTTAATACTGACACTGAGGCACAAAAGCATGGGGATCAA 58 Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATA 340 ||||||||||| |||||||||||||| ||| | | ||||||||| Sbjct 59 ACAGGATTAGAGACCCTGGTAGTCCATGCCCTGACCGATGAATA 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202884905984