Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20healyi_20[genbank_20GCA_5F000826305.1_202015-01-07] 26,188 sequences; 75,318,243 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq25657 172 1e-40 seq13935 100 5e-19 seq2122 100 5e-19 >seq25657 Length=3011 Score = 172 bits (190), Expect = 1e-40 Identities = 121/138 (88%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| |||||||||| ||| | |||||||||||||||| ||||| Sbjct 1358 CCTGGGCCGATAGGTCCGGGTAATCTTTGCAAATTTAATCGTGCTGGGGATAGATCATTG 1417 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||| Sbjct 1418 TAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATT 1477 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 1478 ACGTCCCTGCCCTTTGTA 1495 Score = 140 bits (154), Expect = 6e-31 Identities = 102/116 (88%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCG-GCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||| | || | |||| |||||||||||||||||||||||||| Sbjct 1178 GCTTCTTAGAGGGACTGCTGCGCGCCTAGCCAGCGGAAGTTTGAGGCAATAACAGGTCTG 1237 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1238 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATTAATCCAACGAGT 1293 >seq13935 Length=65 Score = 100 bits (110), Expect = 5e-19 Identities = 60/63 (95%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 263 TTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCC 322 ||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 63 TTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATTACGTCCCTGCCC 4 Query 323 TTT 325 ||| Sbjct 3 TTT 1 >seq2122 Length=65 Score = 100 bits (110), Expect = 5e-19 Identities = 60/63 (95%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 263 TTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCC 322 ||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 1 TTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATTACGTCCCTGCCC 60 Query 323 TTT 325 ||| Sbjct 61 TTT 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946951947264