Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq23587 98.7 1e-18 seq54715 95.1 2e-17 seq52433 95.1 2e-17 seq51714 95.1 2e-17 seq47901 95.1 2e-17 seq44924 95.1 2e-17 seq9224 95.1 2e-17 seq6672 95.1 2e-17 seq6199 95.1 2e-17 seq32604 91.5 2e-16 seq25769 91.5 2e-16 seq48265 89.7 7e-16 seq19968 84.2 3e-14 seq18482 80.6 4e-13 seq14204 80.6 4e-13 seq19795 77.0 5e-12 seq8859 77.0 5e-12 seq8448 77.0 5e-12 >seq23587 Length=127 Score = 98.7 bits (108), Expect = 1e-18 Identities = 79/94 (84%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| ||| | ||| Sbjct 12 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCATAGTCCT 70 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||||||||||||||| ||||||||||| Sbjct 71 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 104 >seq54715 Length=106 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || |||| |||| |||| ||| ||| | ||| Sbjct 11 CTTTCAGCACCGGGCAGGTGTCAGACCCTATATATCGTTTTACAA-CTTAGCAGAGTCCT 69 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||||||||||||||| ||||||||||| Sbjct 70 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 103 >seq52433 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| || | ||| Sbjct 15 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTATCAGAGTCCT 73 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||||||||||||||| ||||||||||| Sbjct 74 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 107 >seq51714 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||| | |||| ||| ||| | ||| Sbjct 99 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATAGTTTTACAA-CTTAGCAGAGTCCT 41 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||||||||||||||| ||||||||||| Sbjct 40 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 7 >seq47901 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| ||| | ||| Sbjct 5 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCT 63 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 ||||||||||||||||||||| ||||||||||| Sbjct 64 TTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 97 >seq44924 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || |||| |||| |||| ||| ||| | ||| Sbjct 96 CTTTCAGCACCGGGCAGGTGTCAGACCCTATAAATCGTTTTACAA-CTTAGCAGAGTCCT 38 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||||||||||||||| ||||||||||| Sbjct 37 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 4 >seq9224 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| ||| | ||| Sbjct 123 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCT 65 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 ||||||||||||||||||||| ||||||||||| Sbjct 64 ATGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 31 >seq6672 Length=106 Score = 95.1 bits (104), Expect = 2e-17 Identities = 77/92 (84%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| ||| | ||| Sbjct 91 CTTTCAGCACCGGGCAGGTGTCAGACCATATACATCGTTTTACAA-CTTAGCAGAGTCCT 33 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATT 98 |||||||||||||||||||||| ||||||||| Sbjct 32 GTGTTTTTAGTAAACAGTCGCTACCCTCTATT 1 >seq6199 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| ||| | | | Sbjct 121 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCAT 63 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||||||||||||||| ||||||||||| Sbjct 62 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 29 >seq32604 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 73/87 (84%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 14 CACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTT 73 ||||||||||| ||||| || ||||||||| |||| ||| ||| | |||||||||| Sbjct 3 CACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCTGTGTTTT 61 Query 74 TAGTAAACAGTCGCTTCCCTCTATTCT 100 || |||||||||||| ||||||||||| Sbjct 62 TATTAAACAGTCGCTACCCTCTATTCT 88 >seq25769 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11 CATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGT 70 || ||||||||||| ||||| || ||||||||| |||| ||| ||| | ||||||| Sbjct 1 CAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCTGTGT 59 Query 71 TTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||| ||||||||||||| ||||||||||| Sbjct 60 TTTTTGTAAACAGTCGCTACCCTCTATTCT 89 >seq48265 Length=127 Score = 89.7 bits (98), Expect = 7e-16 Identities = 75/91 (82%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| | ||||||||| |||| ||| ||| | ||| Sbjct 90 CTTTCAGCACCGGGCAGGTGTCAGACACTATACATCGTTTTACAA-CTTAGCAGAGTCCT 32 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTAT 97 |||||||||||||||||||||| |||||||| Sbjct 31 GTGTTTTTAGTAAACAGTCGCTACCCTCTAT 1 >seq19968 Length=127 Score = 84.2 bits (92), Expect = 3e-14 Identities = 72/88 (82%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| |||| || ||||||||| |||| ||| ||| | ||| Sbjct 41 CTTTCAGCACCGGGCAGGTGTCATACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCT 99 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTC 94 |||||||||||||||||||||| ||||| Sbjct 100 GTGTTTTTAGTAAACAGTCGCTACCCTC 127 >seq18482 Length=92 Score = 80.6 bits (88), Expect = 4e-13 Identities = 67/81 (83%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 20 GCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAA 79 ||||| ||||| || ||||||||| |||| ||| ||| | |||||||||||||||| Sbjct 92 GCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCTGTGTTTTTAGTAA 34 Query 80 ACAGTCGCTTCCCTCTATTCT 100 |||| |||| ||||||||||| Sbjct 33 ACAGACGCTACCCTCTATTCT 13 >seq14204 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 70/86 (81%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| || || || ||||||||| |||| ||| ||| | ||| Sbjct 85 CTTTCAGCACCGGGCAGGTGTAAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCT 27 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCC 92 |||||||||||||||||||||| ||| Sbjct 26 GTGTTTTTAGTAAACAGTCGCTACCC 1 >seq19795 Length=127 Score = 77.0 bits (84), Expect = 5e-12 Identities = 65/79 (82%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 22 AGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAAC 81 ||| ||||| || ||||||||| |||| ||| ||| | |||||||||||||||||| Sbjct 1 AGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCTGTGTTTTTAGTAAAC 59 Query 82 AGTCGCTTCCCTCTATTCT 100 |||| || ||||||||||| Sbjct 60 AGTCTCTACCCTCTATTCT 78 >seq8859 Length=87 Score = 77.0 bits (84), Expect = 5e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| |||| || ||||||||| |||| ||| ||| | ||| Sbjct 5 CTTTCAGCACCGGGCAGGTTTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCT 63 Query 67 GTGTTTTTAGTAAACAGTCGCT 88 |||||||||||||||||||||| Sbjct 64 GTGTTTTTAGTAAACAGTCGCT 85 >seq8448 Length=127 Score = 77.0 bits (84), Expect = 5e-12 Identities = 65/79 (82%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 22 AGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAAC 81 ||| ||||| || ||||||||| |||| ||| ||| | |||||||||||||||||| Sbjct 127 AGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCTGTGTTTTTAGTAAAC 69 Query 82 AGTCGCTTCCCTCTATTCT 100 |||| || ||||||||||| Sbjct 68 AGTCACTACCCTCTATTCT 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693868244104