Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq13797 87.8 7e-15 seq47178 84.2 8e-14 seq58396 82.4 3e-13 seq32405 82.4 3e-13 seq53157 78.8 3e-12 seq27523 78.8 3e-12 seq24632 78.8 3e-12 seq2342 77.0 1e-11 >seq13797 Length=127 Score = 87.8 bits (96), Expect = 7e-15 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 |||||||| |||||| ||| || ||||| ||| ||| |||||| |||||||||||||| Sbjct 4 ACCTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATTAGCCTTTCACCCCTA 63 Query 202 TCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCC 249 || || ||||||| | | | |||| || |||||||| |||||| Sbjct 64 TCTACCACTCATCCCGGTATTATGCAACATACATGGGTTCGATCCTCC 111 >seq47178 Length=127 Score = 84.2 bits (92), Expect = 8e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||||| |||||| ||| || ||||| ||| ||| |||||| |||||||||||||| | Sbjct 127 CTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATTAGCCTTTCACCCCTAGC 68 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCC 249 ||| ||||||| | | | |||| || |||||||| |||||| Sbjct 67 TACAACTCATCCCGGTATTATGCAACATACATGGGTTCGATCCTCC 22 >seq58396 Length=127 Score = 82.4 bits (90), Expect = 3e-13 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| ||| || ||||| ||| ||| |||||| |||||| Sbjct 11 ACGCTCTACCTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATTATCCTTTC 70 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCC 249 ||||||| | || ||||||| | | | |||| || |||||||| |||||| Sbjct 71 ACCCCTAGCTACCACTCATCCCGGTATTATGCAACATACATGGGTTCGATCCTCC 125 >seq32405 Length=127 Score = 82.4 bits (90), Expect = 3e-13 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| ||| || ||||| ||| ||| |||||| || |||| Sbjct 119 ACGCTCTACCTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATTAGCATTTC 60 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCC 249 ||||||| | || ||||||| | | | |||| || |||||||| |||||| Sbjct 59 ACCCCTAGCTACCACTCATCCCGGTATTATGCAACATACATGGGTTCGATCCTCC 5 >seq53157 Length=127 Score = 78.8 bits (86), Expect = 3e-12 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| ||| || ||||| ||| ||| |||||| ||||||| Sbjct 109 ACGCTCTACCTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGATTGATTAGCCTTTC 50 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCG 242 ||||||| | || ||||||| | | | |||| || |||||||| Sbjct 49 ACCCCTAGCTACCACTCATCCCGGTATTATGCAACATACATGGGTTCG 2 >seq27523 Length=127 Score = 78.8 bits (86), Expect = 3e-12 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 |||||||| |||||| ||| || ||||| ||| ||| |||||| |||||||||||||| Sbjct 3 ACCTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATTAGCCTTTCACCCCTA 62 Query 202 TCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCC 249 || ||||||| | | | |||| || |||||||| |||||| Sbjct 63 GTTACCACTCATCCCGGTATTATGCAACATACATGGGTTCGATCCTCC 110 >seq24632 Length=127 Score = 78.8 bits (86), Expect = 3e-12 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 |||||||| |||||| ||| || ||||| ||| ||| |||||| |||||||||||||| Sbjct 125 ACCTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATTAGCCTTTCACCCCTA 66 Query 202 TCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCC 249 || ||||||| | | | |||| || |||||||| |||||| Sbjct 65 GATACCACTCATCCCGGTATTATGCAACATACATGGGTTCGATCCTCC 18 >seq2342 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 84/112 (75%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| ||| || ||||| ||| ||| || ||| ||||||| Sbjct 16 ACGCTCTACCTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTTATTAGCCTTTC 75 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCC 246 ||||||| | || ||||||| | | | |||| || |||||||| ||| Sbjct 76 ACCCCTAGCTACCACTCATCCCGGTATTATGCAACATACATGGGTTCGATCC 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816163223552