Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq59549 84.2 1e-14 seq53268 80.6 2e-13 seq50489 80.6 2e-13 seq39790 80.6 2e-13 seq12937 80.6 2e-13 seq7614 80.6 2e-13 seq2609 80.6 2e-13 seq1297 80.6 2e-13 seq400 80.6 2e-13 seq49559 78.8 6e-13 seq14808 78.8 6e-13 seq49774 77.0 2e-12 seq21849 77.0 2e-12 seq2048 77.0 2e-12 seq59668 75.2 7e-12 seq57408 75.2 7e-12 seq48998 75.2 7e-12 seq47483 75.2 7e-12 seq47129 75.2 7e-12 seq46840 75.2 7e-12 seq46360 75.2 7e-12 seq42837 75.2 7e-12 seq42003 75.2 7e-12 seq34837 75.2 7e-12 seq32876 75.2 7e-12 seq29126 75.2 7e-12 seq17726 75.2 7e-12 seq14555 75.2 7e-12 seq13048 75.2 7e-12 seq12711 75.2 7e-12 seq7619 75.2 7e-12 seq1036 75.2 7e-12 seq399 75.2 7e-12 seq34261 71.6 8e-11 seq32675 71.6 8e-11 seq30125 71.6 8e-11 seq29692 71.6 8e-11 >seq59549 Length=127 Score = 84.2 bits (92), Expect = 1e-14 Identities = 58/63 (92%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||||| ||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 52 TTCAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 109 Query 122 GCT 124 ||| Sbjct 110 GCT 112 >seq53268 Length=120 Score = 80.6 bits (88), Expect = 2e-13 Identities = 57/63 (90%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| ||||||||||||||||||||||||| ||||| | Sbjct 114 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAATA-AACGCGA 57 Query 122 GCT 124 ||| Sbjct 56 GCT 54 >seq50489 Length=65 Score = 80.6 bits (88), Expect = 2e-13 Identities = 57/63 (90%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 5 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 62 Query 122 GCT 124 ||| Sbjct 63 GCT 65 >seq39790 Length=65 Score = 80.6 bits (88), Expect = 2e-13 Identities = 57/63 (90%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 61 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 4 Query 122 GCT 124 ||| Sbjct 3 GCT 1 >seq12937 Length=127 Score = 80.6 bits (88), Expect = 2e-13 Identities = 57/63 (90%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 3 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 60 Query 122 GCT 124 ||| Sbjct 61 GCT 63 >seq7614 Length=127 Score = 80.6 bits (88), Expect = 2e-13 Identities = 57/63 (90%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| |||||| | |||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 53 TTCAATCGGTA-TGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 110 Query 122 GCT 124 ||| Sbjct 111 GCT 113 >seq2609 Length=127 Score = 80.6 bits (88), Expect = 2e-13 Identities = 59/66 (89%), Gaps = 2/66 (3%) Strand=Plus/Minus Query 59 CATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACG 118 || |||| ||||||| | ||||||||||| |||||||||||||||||||||||| ||||| Sbjct 65 CAATTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACG 8 Query 119 CAAGCT 124 | |||| Sbjct 7 CGAGCT 2 >seq1297 Length=65 Score = 80.6 bits (88), Expect = 2e-13 Identities = 57/63 (90%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 2 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 59 Query 122 GCT 124 ||| Sbjct 60 GCT 62 >seq400 Length=127 Score = 80.6 bits (88), Expect = 2e-13 Identities = 57/63 (90%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 8 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCTA 65 Query 122 GCT 124 ||| Sbjct 66 GCT 68 >seq49559 Length=65 Score = 78.8 bits (86), Expect = 6e-13 Identities = 56/62 (90%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 63 TCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAG 122 ||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| || Sbjct 1 TCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAG 58 Query 123 CT 124 || Sbjct 59 CT 60 >seq14808 Length=127 Score = 78.8 bits (86), Expect = 6e-13 Identities = 56/62 (90%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 63 TCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAG 122 ||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| || Sbjct 1 TCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAG 58 Query 123 CT 124 || Sbjct 59 CT 60 >seq49774 Length=127 Score = 77.0 bits (84), Expect = 2e-12 Identities = 55/61 (90%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 123 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 66 Query 122 G 122 | Sbjct 65 G 65 >seq21849 Length=127 Score = 77.0 bits (84), Expect = 2e-12 Identities = 55/61 (90%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 69 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 126 Query 122 G 122 | Sbjct 127 G 127 >seq2048 Length=64 Score = 77.0 bits (84), Expect = 2e-12 Identities = 55/61 (90%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 6 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 63 Query 122 G 122 | Sbjct 64 G 64 >seq59668 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | |||||| |||| |||||||||||||||||||||||| |||||| | Sbjct 44 TTCAATCGGTAGGA-GCGACGTGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 101 Query 122 GCT 124 ||| Sbjct 102 GCT 104 >seq57408 Length=65 Score = 75.2 bits (82), Expect = 7e-12 Identities = 53/58 (91%), Gaps = 2/58 (3%) Strand=Plus/Plus Query 67 TCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| |||| Sbjct 3 TCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAGCT 58 >seq48998 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 53/58 (91%), Gaps = 2/58 (3%) Strand=Plus/Minus Query 67 TCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| |||| Sbjct 127 TCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAGCT 72 >seq47483 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| ||||||||| |||||||||||||| |||||| | Sbjct 29 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAATGGCAGGGACGTAAT-CAACGCGA 86 Query 122 GCT 124 ||| Sbjct 87 GCT 89 >seq47129 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| ||||||||||||||| |||||||| |||||| | Sbjct 23 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGTGACGTAAT-CAACGCGA 80 Query 122 GCT 124 ||| Sbjct 81 GCT 83 >seq46840 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||| ||||||| |||||| | Sbjct 106 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGTACGTAAT-CAACGCGA 49 Query 122 GCT 124 ||| Sbjct 48 GCT 46 >seq46360 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||| ||||||||| |||||| | Sbjct 24 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCATGGACGTAAT-CAACGCGA 81 Query 122 GCT 124 ||| Sbjct 82 GCT 84 >seq42837 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||| | |||||||||||||||||||||||| |||||| | Sbjct 41 TTCAATCGGTAGGA-GCGACGGGCTGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 98 Query 122 GCT 124 ||| Sbjct 99 GCT 101 >seq42003 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||| ||||||||||| |||||| | Sbjct 102 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGAAGGGACGTAAT-CAACGCGA 45 Query 122 GCT 124 ||| Sbjct 44 GCT 42 >seq34837 Length=95 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| || ||||||||||||||||||||| |||||| | Sbjct 4 TTCAATCGGTAGGA-GCGACGGGCGGTGTTTACAAAGGGCAGGGACGTAAT-CAACGCGA 61 Query 122 GCT 124 ||| Sbjct 62 GCT 64 >seq32876 Length=71 Score = 75.2 bits (82), Expect = 7e-12 Identities = 53/58 (91%), Gaps = 2/58 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGC 119 |||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| Sbjct 16 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGC 71 >seq29126 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 53/58 (91%), Gaps = 2/58 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGC 119 |||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| Sbjct 70 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGC 125 >seq17726 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| || |||| | ||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 57 TTCAATCTGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 114 Query 122 GCT 124 ||| Sbjct 115 GCT 117 >seq14555 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 53/58 (91%), Gaps = 2/58 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGC 119 |||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| Sbjct 57 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGC 2 >seq13048 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||| ||||||||||||| |||||| | Sbjct 28 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGTGCAGGGACGTAAT-CAACGCGA 85 Query 122 GCT 124 ||| Sbjct 86 GCT 88 >seq12711 Length=66 Score = 75.2 bits (82), Expect = 7e-12 Identities = 53/58 (91%), Gaps = 2/58 (3%) Strand=Plus/Plus Query 67 TCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| |||| Sbjct 1 TCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAGCT 56 >seq7619 Length=127 Score = 75.2 bits (82), Expect = 7e-12 Identities = 53/58 (91%), Gaps = 2/58 (3%) Strand=Plus/Minus Query 67 TCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| |||| Sbjct 61 TCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAGCT 6 >seq1036 Length=124 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||| ||||| |||||||||||||||||||||||| |||||| | Sbjct 42 TTCAATCGGTAGGA-GCGACTGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGA 99 Query 122 GCT 124 ||| Sbjct 100 GCT 102 >seq399 Length=64 Score = 75.2 bits (82), Expect = 7e-12 Identities = 53/58 (91%), Gaps = 2/58 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGC 119 |||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| Sbjct 8 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGC 63 >seq34261 Length=127 Score = 71.6 bits (78), Expect = 8e-11 Identities = 46/49 (94%), Gaps = 1/49 (2%) Strand=Plus/Minus Query 76 AGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||| |||||||||||||||||||||||| |||||| |||| Sbjct 127 AGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAGCT 80 >seq32675 Length=114 Score = 71.6 bits (78), Expect = 8e-11 Identities = 52/58 (90%), Gaps = 2/58 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGC 119 |||| | ||||| | ||||||||||| |||||||||||||||||||||||| |||||| Sbjct 57 TTCAATAGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGC 2 >seq30125 Length=66 Score = 71.6 bits (78), Expect = 8e-11 Identities = 46/49 (94%), Gaps = 1/49 (2%) Strand=Plus/Plus Query 76 AGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||| |||||||||||||||||||||||| |||||| |||| Sbjct 1 AGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAGCT 48 >seq29692 Length=64 Score = 71.6 bits (78), Expect = 8e-11 Identities = 46/49 (94%), Gaps = 1/49 (2%) Strand=Plus/Plus Query 76 AGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||| |||||||||||||||||||||||| |||||| |||| Sbjct 2 AGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAGCT 49 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300577084640