Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq60526 82.4 2e-13 seq38002 82.4 2e-13 seq30141 82.4 2e-13 seq432 82.4 2e-13 seq44624 80.6 5e-13 seq3930 80.6 5e-13 seq2574 80.6 5e-13 seq59372 77.0 6e-12 seq57457 73.4 8e-11 seq54388 73.4 8e-11 seq29481 73.4 8e-11 seq12412 73.4 8e-11 >seq60526 Length=127 Score = 82.4 bits (90), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGC 70 |||||| |||| |||||||| ||||| | ||||||||||| | || || || |||| Sbjct 123 ATCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC--CTTTAAAAGACTTGGGC 66 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 | | | |||||||||||||||| | ||| |||||| || |||| ||||| |||||| Sbjct 65 CATTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTAGGCTTG 7 Query 131 GTG 133 || Sbjct 6 TTG 4 >seq38002 Length=127 Score = 82.4 bits (90), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGC 70 |||||| |||| |||||||| ||||| | ||||||||||| | || || || |||| Sbjct 122 ATCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC--CTTTAAAAGACTTGGGC 65 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 || | |||||||||||||||| | ||| |||||| || |||| ||||| |||||| Sbjct 64 AGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTAGGCTTG 6 Query 131 GTG 133 || Sbjct 5 TTG 3 >seq30141 Length=127 Score = 82.4 bits (90), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGC 70 |||||| |||| |||||||| ||||| | ||||||||||| | || || || ||| Sbjct 121 ATCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC--CTTTAAAAGACTTGGGA 64 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | |||||||||||||||| | ||| |||||| || |||| ||||| |||||| Sbjct 63 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTAGGCTTG 5 Query 131 GTG 133 || Sbjct 4 TTG 2 >seq432 Length=127 Score = 82.4 bits (90), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGG-C 70 |||||| |||| |||||||| ||||| | ||||||||||| | || || || || | Sbjct 120 ATCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC--CTTTAAAAGACTTGGTC 63 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | |||||||||||||||| | ||| |||||| || |||| ||||| |||||| Sbjct 62 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTAGGCTTG 4 Query 131 GTG 133 || Sbjct 3 TTG 1 >seq44624 Length=127 Score = 80.6 bits (88), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 4/122 (3%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCC 71 ||||| |||| |||||||| ||||| | ||||||||||| | || || || ||||| Sbjct 127 TCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC--CTTTAAAAGACTTGGGCC 70 Query 72 GTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGG 131 || | | |||||||||||||| | ||| |||||| || |||| ||||| |||||| Sbjct 69 GTTT-TAAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTAGGCTTGT 11 Query 132 TG 133 || Sbjct 10 TG 9 >seq3930 Length=127 Score = 80.6 bits (88), Expect = 5e-13 Identities = 92/120 (77%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTG-GGC 70 |||||| |||| |||||||| ||||| | ||||||||||| | || || || ||| Sbjct 10 ATCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC--CTTTAAAAGACTTTGGC 67 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | |||||||||||||||| | ||| |||||| || |||| ||||| |||||| Sbjct 68 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTAGGCTTG 126 >seq2574 Length=127 Score = 80.6 bits (88), Expect = 5e-13 Identities = 92/120 (77%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGG-GC 70 |||||| |||| |||||||| ||||| | ||||||||||| | || || || | || Sbjct 9 ATCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC--CTTTAAAAGACTTGTGC 66 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | |||||||||||||||| | ||| |||||| || |||| ||||| |||||| Sbjct 67 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTAGGCTTG 125 >seq59372 Length=127 Score = 77.0 bits (84), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 15 AGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGT 73 ||| |||| |||||||| ||||| | ||||||||||| | || || || ||||||| Sbjct 1 AGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC--CTTTAAAAGACTTGGGCCGT 58 Query 74 GTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133 | ||| |||||||||||| | ||| |||||| || |||| ||||| |||||| || Sbjct 59 TT-TCATTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTAGGCTTGTTG 117 >seq57457 Length=127 Score = 73.4 bits (80), Expect = 8e-11 Identities = 88/116 (76%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTC-TGGGC 70 |||||| |||| |||||||| ||||| | |||||||||| || || | | ||||| Sbjct 15 ATCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGC--CCTTTAAAATACTTGGGC 72 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||| | |||||||||||||||| | ||| |||||| || |||| ||||| || Sbjct 73 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTAGG 127 >seq54388 Length=127 Score = 73.4 bits (80), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTCAGTCCCAATGTGGC 92 ||||| | ||||||||||| | || || || ||||||| | |||||||||||||||| Sbjct 125 AATATTCTCCACTGCTGCC--CTTTAAAAGACTTGGGCCGTTT-TCAGTCCCAATGTGGC 69 Query 93 CGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACT 152 | | | |||||| || |||| ||||| |||||| || |||| || ||||| Sbjct 68 TGATAATTCTCTCAAACCAGCTAAGCATCGTAGGCTTGTTGAATAATTACTACAACAACT 9 Query 153 ACCTAATC 160 |||||||| Sbjct 8 ACCTAATC 1 >seq29481 Length=127 Score = 73.4 bits (80), Expect = 8e-11 Identities = 88/116 (76%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 19 TTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTC-TGGGCCGTGTCT 77 |||| |||||||| ||||| | |||||||||| || || || | |||||||| | | Sbjct 126 TTTCGCCCATTGTCAAATATTCTCCACTGCTGC--CCTTTAAAAGACTTGGGCCGT-TTT 70 Query 78 CAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133 ||||| ||||||||| | ||| |||||| || |||| ||||| |||||| || Sbjct 69 CAGTCACAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTAGGCTTGTTG 14 >seq12412 Length=127 Score = 73.4 bits (80), Expect = 8e-11 Identities = 88/116 (76%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 19 TTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTC-TGGGCCGTGTCT 77 |||| |||||||| ||||| | |||||||||| || || || | |||||||| | | Sbjct 125 TTTCGCCCATTGTCAAATATTCTCCACTGCTGC--CCTTTAAAAGACTTGGGCCGT-TTT 69 Query 78 CAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133 |||| |||||||||| | ||| |||||| || |||| ||||| |||||| || Sbjct 68 CAGTACCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTAGGCTTGTTG 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 997610784768