Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq21950 80.6 3e-13 seq39690 77.0 4e-12 seq37139 77.0 4e-12 seq34236 77.0 4e-12 seq16131 77.0 4e-12 seq15304 77.0 4e-12 seq5866 77.0 4e-12 >seq21950 Length=127 Score = 80.6 bits (88), Expect = 3e-13 Identities = 92/120 (77%), Gaps = 14/120 (12%) Strand=Plus/Plus Query 10 AAACCAAC--AAAATAGGGACGCACG-TCCTATTCTATTATTCCATGCTAATGTATTCGG 66 |||||||| |||||||| || | |||||||| ||||| |||||||||||||||||| Sbjct 3 AAACCAACTGAAAATAGGAGGTCAGGGTCCTATTCCATTATCCCATGCTAATGTATTCGG 62 Query 67 --GC-GTAA--------GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 || | || ||| |||||||||||||||||||| ||| |||||| | |||| Sbjct 63 TTGCAGGAAAAATATCTGCCCGCTTTGAACACTCTAATTTTTTCACGGTAAACGATCTGG 122 >seq39690 Length=127 Score = 77.0 bits (84), Expect = 4e-12 Identities = 91/120 (76%), Gaps = 14/120 (12%) Strand=Plus/Minus Query 10 AAACCAAC--AAAATAGGGACGCACG-TCCTATTCTATTATTCCATGCTAATGTATTCGG 66 |||||||| |||||||| || | |||||||| ||||| ||||||||||||||| || Sbjct 121 AAACCAACTGAAAATAGGAGGTCAGGGTCCTATTCCATTATCCCATGCTAATGTATTAGG 62 Query 67 --GC--GTAA-------GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 || | || ||| |||||||||||||||||||| ||| |||||| | |||| Sbjct 61 TGGCAGGAAAAATATCTGCCCGCTTTGAACACTCTAATTTTTTCACGGTAAACGATCTGG 2 >seq37139 Length=127 Score = 77.0 bits (84), Expect = 4e-12 Identities = 89/118 (75%), Gaps = 14/118 (12%) Strand=Plus/Plus Query 12 ACCAAC--AAAATAGGGACGCACG-TCCTATTCTATTATTCCATGCTAATGTATTCG--G 66 |||||| |||||||| || | |||||||| ||||| ||||||||||||||||| | Sbjct 1 ACCAACTGAAAATAGGAGGTCAGGGTCCTATTCCATTATCCCATGCTAATGTATTCGGTG 60 Query 67 GCGTAA---------GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 || | | ||| |||||||||||||||||||| ||| |||||| | |||| Sbjct 61 GCATGAAAAATATCTGCCCGCTTTGAACACTCTAATTTTTTCACGGTAAACGATCTGG 118 >seq34236 Length=127 Score = 77.0 bits (84), Expect = 4e-12 Identities = 89/120 (74%), Gaps = 14/120 (12%) Strand=Plus/Minus Query 10 AAACCAAC--AAAATAGGGACGCACG-TCCTATTCTATTATTCCATGCTAATGTATTCGG 66 |||||||| |||||||| || | |||||||| ||||| |||||||||||||||||| Sbjct 127 AAACCAACTGAAAATAGGAGGTCAGGGTCCTATTCCATTATCCCATGCTAATGTATTCGG 68 Query 67 GCG-----------TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 | | ||| |||||||||||||||||||| ||| |||||| | |||| Sbjct 67 TGGAAGGAAAAATATCTGCCCGCTTTGAACACTCTAATTTTTTCACGGTAAACGATCTGG 8 >seq16131 Length=127 Score = 77.0 bits (84), Expect = 4e-12 Identities = 91/120 (76%), Gaps = 14/120 (12%) Strand=Plus/Plus Query 10 AAACCAAC--AAAATAGGGACGCACG-TCCTATTCTATTATTCCATGCTAATGTATTCGG 66 |||||||| |||||||| || | |||||||| ||||| |||||||||||||||| | Sbjct 6 AAACCAACTGAAAATAGGAGGTCAGGGTCCTATTCCATTATCCCATGCTAATGTATTCTG 65 Query 67 --GC--GTAA-------GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 || | || ||| |||||||||||||||||||| ||| |||||| | |||| Sbjct 66 TGGCAGGAAAAATATCTGCCCGCTTTGAACACTCTAATTTTTTCACGGTAAACGATCTGG 125 >seq15304 Length=127 Score = 77.0 bits (84), Expect = 4e-12 Identities = 91/120 (76%), Gaps = 14/120 (12%) Strand=Plus/Plus Query 10 AAACCAAC--AAAATAGGGACGCACG-TCCTATTCTATTATTCCATGCTAATGTATTCGG 66 |||||||| |||||||| || | |||||||| ||||| ||||||||||||||| || Sbjct 7 AAACCAACTGAAAATAGGAGGTCAGGGTCCTATTCCATTATCCCATGCTAATGTATTTGG 66 Query 67 --GC--GTAA-------GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 || | || ||| |||||||||||||||||||| ||| |||||| | |||| Sbjct 67 TGGCAGGAAAAATATCTGCCCGCTTTGAACACTCTAATTTTTTCACGGTAAACGATCTGG 126 >seq5866 Length=127 Score = 77.0 bits (84), Expect = 4e-12 Identities = 74/94 (79%), Gaps = 11/94 (12%) Strand=Plus/Minus Query 33 GTCCTATTCTATTATTCCATGCTAATGTATTCG--GGC-GTAA--------GCCTGCTTT 81 ||||||||| ||||| ||||||||||||||||| ||| | || ||| ||||| Sbjct 118 GTCCTATTCCATTATCCCATGCTAATGTATTCGGTGGCAGGAAAAATATCTGCCAGCTTT 59 Query 82 GAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 ||||||||||||||| ||| |||||| | |||| Sbjct 58 GAACACTCTAATTTTTTCACGGTAAACGATCTGG 25 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594744209232