Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq432 95.1 3e-17 seq60526 91.5 4e-16 seq57457 91.5 4e-16 seq38002 91.5 4e-16 seq30141 91.5 4e-16 seq3930 91.5 4e-16 seq2574 91.5 4e-16 seq44624 89.7 1e-15 seq59372 86.0 2e-14 seq12412 86.0 2e-14 seq18649 82.4 2e-13 seq29481 80.6 7e-13 seq4941 75.2 3e-11 seq54388 73.4 1e-10 seq33638 73.4 1e-10 seq24369 73.4 1e-10 >seq432 Length=127 Score = 95.1 bits (104), Expect = 3e-17 Identities = 91/113 (81%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 ||||||||| |||||||||| ||||||| |||||||||| || || || | ||| | Sbjct 120 ATCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGC--CCTTTAAAAGACTTGGTC 63 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 ||| | ||||| ||| |||||||| |||| |||||| |||||||| | ||||| Sbjct 62 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGT 11 >seq60526 Length=127 Score = 91.5 bits (100), Expect = 4e-16 Identities = 90/113 (80%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 ||||||||| |||||||||| ||||||| |||||||||| || || || | ||| | Sbjct 123 ATCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGC--CCTTTAAAAGACTTGGGC 66 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 | | | ||||| ||| |||||||| |||| |||||| |||||||| | ||||| Sbjct 65 CAT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGT 14 >seq57457 Length=127 Score = 91.5 bits (100), Expect = 4e-16 Identities = 90/113 (80%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 ||||||||| |||||||||| ||||||| |||||||||| || || | | ||| | Sbjct 15 ATCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGC--CCTTTAAAATACTTGGGC 72 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 ||| | ||||| ||| |||||||| |||| |||||| |||||||| | ||||| Sbjct 73 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGT 124 >seq38002 Length=127 Score = 91.5 bits (100), Expect = 4e-16 Identities = 90/113 (80%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 ||||||||| |||||||||| ||||||| |||||||||| || || || | ||| | Sbjct 122 ATCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGC--CCTTTAAAAGACTTGGGC 65 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 || | ||||| ||| |||||||| |||| |||||| |||||||| | ||||| Sbjct 64 AGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGT 13 >seq30141 Length=127 Score = 91.5 bits (100), Expect = 4e-16 Identities = 90/113 (80%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 ||||||||| |||||||||| ||||||| |||||||||| || || || | ||| Sbjct 121 ATCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGC--CCTTTAAAAGACTTGGGA 64 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 ||| | ||||| ||| |||||||| |||| |||||| |||||||| | ||||| Sbjct 63 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGT 12 >seq3930 Length=127 Score = 91.5 bits (100), Expect = 4e-16 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACC 106 ||||||||| |||||||||| ||||||| ||||||||||| | || | ||| || Sbjct 10 ATCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCCCTTTAAAAGACTTTGG-CC 68 Query 107 GTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 || | ||||| ||| |||||||| |||| |||||| |||||||| | ||||| Sbjct 69 GT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGT 119 >seq2574 Length=127 Score = 91.5 bits (100), Expect = 4e-16 Identities = 90/113 (80%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 ||||||||| |||||||||| ||||||| |||||||||| || || || | || | Sbjct 9 ATCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGC--CCTTTAAAAGACTTGTGC 66 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 ||| | ||||| ||| |||||||| |||| |||||| |||||||| | ||||| Sbjct 67 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGT 118 >seq44624 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 4/112 (4%) Strand=Plus/Minus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACC 106 |||||||| |||||||||| ||||||| |||||||||| || || || | ||| || Sbjct 127 TCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGC--CCTTTAAAAGACTTGGGCC 70 Query 107 GTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 || | | ||| ||| |||||||| |||| |||||| |||||||| | ||||| Sbjct 69 GT-TTTAAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGT 19 >seq59372 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 50 AGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGT 108 |||||| |||||||||| ||||||| |||||||||| || || || | ||| |||| Sbjct 1 AGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGC--CCTTTAAAAGACTTGGGCCGT 58 Query 109 GTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 | ||| | ||| |||||||| |||| |||||| |||||||| | ||||| Sbjct 59 -TTTCATTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGT 107 >seq12412 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 86/108 (80%), Gaps = 4/108 (4%) Strand=Plus/Minus Query 52 GCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGT 110 |||| |||||||||| ||||||| |||||||||| || || || | ||| |||| | Sbjct 127 GCTTTCGCCCATTGTCAAATATTCTCCACTGCTGC--CCTTTAAAAGACTTGGGCCGT-T 71 Query 111 CTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 ||||| ||| |||||||| |||| |||||| |||||||| | ||||| Sbjct 70 TTCAGTACCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGT 23 >seq18649 Length=136 Score = 82.4 bits (90), Expect = 2e-13 Identities = 87/111 (78%), Gaps = 3/111 (3%) Strand=Plus/Plus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTG-CCTCCCGTAGGAGTCTGGAC 105 |||| |||| ||| |||||| ||||||| ||||||||| ||| | || | ||||| Sbjct 15 ATCAAGCTTTCGCTCATTGTCAAATATTCTCCACTGCTGCCCTTTAAAAAGACT-TGGAC 73 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATC 156 ||| | ||||||||| |||||||| |||| |||||| | |||||| | ||| Sbjct 74 CGT-TTTCAGTTCCAATGTGGCTGATCATTCTCTCAAATCAGCTAAGCATC 123 >seq29481 Length=127 Score = 80.6 bits (88), Expect = 7e-13 Identities = 84/107 (79%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 53 CTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTC 111 ||| |||||||||| ||||||| |||||||||| || || || | ||| |||| | Sbjct 127 CTTTCGCCCATTGTCAAATATTCTCCACTGCTGC--CCTTTAAAAGACTTGGGCCGT-TT 71 Query 112 TCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 ||||| || |||||||| |||| |||||| |||||||| | ||||| Sbjct 70 TCAGTCACAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGT 24 >seq4941 Length=127 Score = 75.2 bits (82), Expect = 3e-11 Identities = 80/102 (78%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 58 GCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGT 116 ||||||||| ||||||| |||||||||| || || || | ||| |||| | ||||| Sbjct 1 GCCCATTGTCAAATATTCTCCACTGCTGC--CCTTTAAAAGACTTGGGCCGT-TTTCAGT 57 Query 117 TCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 ||| | |||||| |||| |||||| |||||||| | ||||| Sbjct 58 CCCAATTTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGT 99 >seq54388 Length=127 Score = 73.4 bits (80), Expect = 1e-10 Identities = 95/128 (74%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGGC 127 ||||||| |||||||||| || || || | ||| |||| | ||||| ||| |||||| Sbjct 125 AATATTCTCCACTGCTGC--CCTTTAAAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGC 69 Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187 || | || |||||| |||||||| | ||||| | || | || ||||| | ||||| Sbjct 68 TGATAATTCTCTCAAACCAGCTAAGCATCGTAGGCTTGTTGAATAATTACTACAACAACT 9 Query 188 AGCTAATC 195 | |||||| Sbjct 8 ACCTAATC 1 >seq33638 Length=127 Score = 73.4 bits (80), Expect = 1e-10 Identities = 94/125 (75%), Gaps = 6/125 (5%) Strand=Plus/Minus Query 19 GCCTTCT--TCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 ||||||| ||| |||| ||| || ||||||||| |||||||||| |||||| Sbjct 122 GCCTTCTCATCACCCACGTAACATTACTCGATCAGGCTTTCGCCCATTGTCAAATATTAT 63 Query 77 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATC 135 |||||||||| || || || | ||| |||| | ||||| ||| |||||||| |||| Sbjct 62 CCACTGCTGC--CCTTTAAAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 6 Query 136 CTCTC 140 ||||| Sbjct 5 CTCTC 1 >seq24369 Length=98 Score = 73.4 bits (80), Expect = 1e-10 Identities = 76/97 (78%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 54 TTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTC 113 || |||||||||| ||||||| ||||||||||| | || | ||| |||| | || Sbjct 98 TTTCGCCCATTGTCAAATATTCTCCACTGCTGCCATTTAAAAGACT-TGGGCCGT-TTTC 41 Query 114 AGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||| ||| |||||||| |||| |||||| |||||||| Sbjct 40 AGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTA 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221433717248