Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq13797 91.5 5e-16 seq58396 87.8 6e-15 seq53157 87.8 6e-15 seq47178 87.8 6e-15 seq35430 87.8 6e-15 seq32405 87.8 6e-15 seq30178 87.8 6e-15 seq24937 87.8 6e-15 seq8812 87.8 6e-15 seq6516 87.8 6e-15 seq27523 86.0 2e-14 seq24632 86.0 2e-14 seq32467 84.2 7e-14 seq2342 84.2 7e-14 seq42573 82.4 3e-13 seq41658 78.8 3e-12 seq22428 78.8 3e-12 seq11059 78.8 3e-12 seq52888 77.0 1e-11 seq38666 77.0 1e-11 seq35431 77.0 1e-11 seq29429 77.0 1e-11 seq4638 77.0 1e-11 seq30282 75.2 4e-11 >seq13797 Length=127 Score = 91.5 bits (100), Expect = 5e-16 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 91 GGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAG 150 ||||| |||||||| |||||| | ||| |||||||| || | |||||||||||| Sbjct 111 GGAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGATAGGGGTGAAAG 52 Query 151 GCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAG 200 ||||| ||| ||| | ||||| || |||| ||||| |||||||||||| Sbjct 51 GCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAG 2 >seq58396 Length=127 Score = 87.8 bits (96), Expect = 6e-15 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 91 GGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAG 150 ||||| |||||||| |||||| | ||| |||||||| || | |||||||||||| Sbjct 125 GGAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGTGAAAG 66 Query 151 GCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 | ||| ||| ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 65 GATAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 13 >seq53157 Length=127 Score = 87.8 bits (96), Expect = 6e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 98 CGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAAC 157 |||||||| |||||| | ||| |||||||| || | ||||||||||||||||| | Sbjct 2 CGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGTGAAAGGCTAATC 61 Query 158 AAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 || ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 62 AATCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 107 >seq47178 Length=127 Score = 87.8 bits (96), Expect = 6e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 91 GGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAG 150 ||||| |||||||| |||||| | ||| |||||||| ||| | |||||||||||| Sbjct 22 GGAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTTGTAGCTAGGGGTGAAAG 81 Query 151 GCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAG 196 ||||| ||| ||| | ||||| || |||| ||||| |||||||| Sbjct 82 GCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAG 127 >seq35430 Length=127 Score = 87.8 bits (96), Expect = 6e-15 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 91 GGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAG 150 ||||| |||||||| |||||| | ||| |||||||| || | |||| ||||||| Sbjct 116 GGAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAGGTGTGAAAG 57 Query 151 GCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||| ||| ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 56 GCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 4 >seq32405 Length=127 Score = 87.8 bits (96), Expect = 6e-15 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 91 GGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAG 150 ||||| |||||||| |||||| | ||| |||||||| || | ||||||||||| Sbjct 5 GGAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGTGAAAT 64 Query 151 GCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||| ||| ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 65 GCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 117 >seq30178 Length=127 Score = 87.8 bits (96), Expect = 6e-15 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 91 GGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAG 150 ||||| |||||||| |||||| | ||| |||||||| || | ||||| |||||| Sbjct 11 GGAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGTTGAAAG 70 Query 151 GCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||| ||| ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 71 GCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 123 >seq24937 Length=127 Score = 87.8 bits (96), Expect = 6e-15 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 91 GGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAG 150 ||||| |||||||| |||||| | ||| |||||||| || | |||||| ||||| Sbjct 118 GGAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGCGAAAG 59 Query 151 GCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||| ||| ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 58 GCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 6 >seq8812 Length=127 Score = 87.8 bits (96), Expect = 6e-15 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 91 GGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAG 150 ||||| |||||||| |||||| | ||| |||||||| || | ||||||| |||| Sbjct 9 GGAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGTTAAAG 68 Query 151 GCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||| ||| ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 69 GCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 121 >seq6516 Length=127 Score = 87.8 bits (96), Expect = 6e-15 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 91 GGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAG 150 ||||| |||||||| |||||| | ||| |||||||| || | |||||| ||||| Sbjct 10 GGAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGGGAAAG 69 Query 151 GCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||| ||| ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 70 GCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 122 >seq27523 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 91 GGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAG 150 ||||| |||||||| |||||| | ||| |||||||| || |||||||||||| Sbjct 110 GGAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAACTAGGGGTGAAAG 51 Query 151 GCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAG 200 ||||| ||| ||| | ||||| || |||| ||||| |||||||||||| Sbjct 50 GCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAG 1 >seq24632 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 91 GGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAG 150 ||||| |||||||| |||||| | ||| |||||||| || |||||||||||| Sbjct 18 GGAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTATCTAGGGGTGAAAG 77 Query 151 GCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAG 200 ||||| ||| ||| | ||||| || |||| ||||| |||||||||||| Sbjct 78 GCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAG 127 >seq32467 Length=127 Score = 84.2 bits (92), Expect = 7e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 98 CGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAAC 157 |||||||| |||||| | ||| |||||||| || | ||||||||||||||||| | Sbjct 127 CGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGTGAAAGGCTAATC 68 Query 158 AAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 || || | ||||| || |||| ||||| |||||||||||| || Sbjct 67 AAGATTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 22 >seq2342 Length=127 Score = 84.2 bits (92), Expect = 7e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 98 CGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAAC 157 |||||||| |||||| | ||| |||||||| || | ||||||||||||||||| Sbjct 123 CGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGTGAAAGGCTAATA 64 Query 158 AAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 || ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 63 AAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 18 >seq42573 Length=127 Score = 82.4 bits (90), Expect = 3e-13 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 109 ATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAA 168 |||||| | ||| |||||||| || | ||||||||||||||||| ||| ||| | Sbjct 6 ATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTAGTTT 65 Query 169 TAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||| || |||| ||||| |||||||||||| || Sbjct 66 TAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 100 >seq41658 Length=127 Score = 78.8 bits (86), Expect = 3e-12 Identities = 54/60 (90%), Gaps = 1/60 (2%) Strand=Plus/Minus Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 |||| ||||| |||||||| ||||||||||| |||||||||| |||||||||||||||| Sbjct 96 ACAGTTAGGAGGTTGGCTTAGAAGCAGCCAT-CATTTAAAGAAAGCGTAACAGCTCACTA 38 >seq22428 Length=98 Score = 78.8 bits (86), Expect = 3e-12 Identities = 54/60 (90%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 |||| ||||| |||||||| ||||||||||||| |||||||| |||||||||||||||| Sbjct 4 ACAGTTAGGAGGTTGGCTTAGAAGCAGCCATTC-TTTAAAGAAAGCGTAACAGCTCACTA 62 >seq11059 Length=127 Score = 78.8 bits (86), Expect = 3e-12 Identities = 54/60 (90%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 |||| |||||||||||||| |||||||||| || |||||||| |||||||||||||||| Sbjct 54 ACAGTTAGGATGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAACAGCTCACTA 112 >seq52888 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 124 GGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCC 183 |||||||| || | ||||||||||||||||| ||| ||| | ||||| || |||| | Sbjct 122 GGGATGAGTGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTACTCTTC 63 Query 184 GAAAACTATTTAGGTAGTGC 203 |||| |||||||||||| || Sbjct 62 GAAATCTATTTAGGTAGAGC 43 >seq38666 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 109 ATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAA 168 |||||| | ||| |||||||| || | ||||||||||||||||| ||| ||| | Sbjct 2 ATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTAGTGT 61 Query 169 TAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 || || || |||| ||||| |||||||||||| || Sbjct 62 TATCTAGTACTCTACGAAATCTATTTAGGTAGAGC 96 >seq35431 Length=98 Score = 77.0 bits (84), Expect = 1e-11 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 109 ATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAA 168 |||||| | ||| |||||||| || | |||| |||||||||||| ||| ||| | Sbjct 98 ATGTTGCATAATACCGGGATGAGTGGTAGCTAGGAGTGAAAGGCTAATCAAGCTTAGTGT 39 Query 169 TAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||| || |||| ||||| |||||||||||| || Sbjct 38 TAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 4 >seq29429 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 109 ATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAA 168 |||||| | ||| |||||||| || | ||||||||||||||||| ||| ||| | Sbjct 127 ATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTAGTGT 68 Query 169 TAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||| | || |||| ||||| |||||||||||| || Sbjct 67 TAGATAGTACTCTACGAAATCTATTTAGGTAGAGC 33 >seq4638 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 109 ATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAA 168 |||||| | ||| |||||||| || | ||||||||||||||||| ||| ||| Sbjct 8 ATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTATTGT 67 Query 169 TAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||| || |||| ||||| |||||||||||| || Sbjct 68 TAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 102 >seq30282 Length=91 Score = 75.2 bits (82), Expect = 4e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 109 ATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAA 168 |||||| | ||| |||||||| || | ||||||||||||||||| ||| ||| | | Sbjct 6 ATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTAGTAT 65 Query 169 TAGCTGGTTCTCTCCGAAAACTATTT 194 ||||| || |||| ||||| |||||| Sbjct 66 TAGCTAGTACTCTACGAAATCTATTT 91 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688264404992