Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq39272 194 3e-47 seq12136 194 3e-47 seq46188 163 4e-38 seq39533 141 1e-31 seq46676 136 6e-30 seq41885 78.8 1e-12 >seq39272 Length=516 Score = 194 bits (214), Expect = 3e-47 Identities = 130/141 (92%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 202 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 145 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||| ||| |||| |||||||||||||||| |||||| |||||| |||||||| Sbjct 144 CTCGTTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTGCAAAGATT 85 Query 120 ACCCGGACCTGTCGGCCAAGG 140 |||||||||| |||||| ||| Sbjct 84 ACCCGGACCTATCGGCCCAGG 64 >seq12136 Length=7116 Score = 194 bits (214), Expect = 3e-47 Identities = 130/141 (92%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 3002 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 2945 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||| ||| |||| |||||||||||||||| |||||| |||||| |||||||| Sbjct 2944 CTCGTTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTGCAAAGATT 2885 Query 120 ACCCGGACCTGTCGGCCAAGG 140 |||||||||| |||||| ||| Sbjct 2884 ACCCGGACCTATCGGCCCAGG 2864 Score = 141 bits (156), Expect = 1e-31 Identities = 87/93 (94%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 146 GACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 205 ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2798 GACTCGTTGGATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 2739 Query 206 ACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||||||||||||||||||||||| | ||||| Sbjct 2738 ACCTGTTATTGCCTCAAACTTCCGCTGGCTAAA 2706 >seq46188 Length=352 Score = 163 bits (180), Expect = 4e-38 Identities = 110/119 (92%), Gaps = 3/119 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 117 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 60 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGAT 118 ||||||||||| ||| |||| |||||||||||||||| |||||| |||||| ||||||| Sbjct 59 CTCGTTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTGCAAAGAT 1 >seq39533 Length=343 Score = 141 bits (156), Expect = 1e-31 Identities = 87/93 (94%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 146 GACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 205 ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25 GACTCGTTGGATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 84 Query 206 ACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||||||||||||||||||||||| | ||||| Sbjct 85 ACCTGTTATTGCCTCAAACTTCCGCTGGCTAAA 117 >seq46676 Length=424 Score = 136 bits (150), Expect = 6e-30 Identities = 86/93 (92%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 146 GACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 205 ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137 GACTCGTTGGATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 196 Query 206 ACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||||||| |||||||||||||| | ||||| Sbjct 197 ACCTGTTATCGCCTCAAACTTCCGCTGGCTAAA 229 Score = 89.7 bits (98), Expect = 8e-16 Identities = 62/69 (90%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 73 CAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATTACCCGGACCTGT 131 ||| |||| |||||||||||||||| |||||| |||||| |||||||||||||||||| | Sbjct 3 CAATAATTACAATGATCTATCCCCAGCACGATTAAATTTGCAAAGATTACCCGGACCTAT 62 Query 132 CGGCCAAGG 140 ||||| ||| Sbjct 63 CGGCCCAGG 71 >seq41885 Length=388 Score = 78.8 bits (86), Expect = 1e-12 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 188 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 388 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGCTGGCTAAA 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751659069285