Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq43891 86.0 3e-15 seq40600 86.0 3e-15 seq40015 86.0 3e-15 seq32900 86.0 3e-15 seq26080 86.0 3e-15 seq25424 86.0 3e-15 seq12136 86.0 3e-15 seq39096 75.2 6e-12 >seq43891 Length=575 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||| || |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 487 AACGTCTCCTAATCGCTGGTCGGCATCGTTTATGGTTAAGACTACGACGGTATCTGATCG 428 Query 111 TCTTCGA 117 ||||||| Sbjct 427 TCTTCGA 421 >seq40600 Length=362 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||| || |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 3 AACGTCTCCTAATCGCTGGTCGGCATCGTTTATGGTTAAGACTACGACGGTATCTGATCG 62 Query 111 TCTTCGA 117 ||||||| Sbjct 63 TCTTCGA 69 >seq40015 Length=264 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||| || |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 193 AACGTCTCCTAATCGCTGGTCGGCATCGTTTATGGTTAAGACTACGACGGTATCTGATCG 134 Query 111 TCTTCGA 117 ||||||| Sbjct 133 TCTTCGA 127 >seq32900 Length=373 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||| || |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 334 AACGTCTCCTAATCGCTGGTCGGCATCGTTTATGGTTAAGACTACGACGGTATCTGATCG 275 Query 111 TCTTCGA 117 ||||||| Sbjct 274 TCTTCGA 268 >seq26080 Length=370 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||| || |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 4 AACGTCTCCTAATCGCTGGTCGGCATCGTTTATGGTTAAGACTACGACGGTATCTGATCG 63 Query 111 TCTTCGA 117 ||||||| Sbjct 64 TCTTCGA 70 >seq25424 Length=780 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||| || |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 647 AACGTCTCCTAATCGCTGGTCGGCATCGTTTATGGTTAAGACTACGACGGTATCTGATCG 588 Query 111 TCTTCGA 117 ||||||| Sbjct 587 TCTTCGA 581 >seq12136 Length=7116 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||| || |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 2201 AACGTCTCCTAATCGCTGGTCGGCATCGTTTATGGTTAAGACTACGACGGTATCTGATCG 2142 Query 111 TCTTCGA 117 ||||||| Sbjct 2141 TCTTCGA 2135 >seq39096 Length=450 Score = 75.2 bits (82), Expect = 6e-12 Identities = 51/56 (91%), Gaps = 1/56 (2%) Strand=Plus/Minus Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || ||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 316 ATCGCTGGTCGGCAC-GTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278277854610