Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq43891 224 2e-56 seq43487 224 2e-56 seq25424 224 2e-56 seq12136 224 2e-56 seq43010 217 3e-54 seq40600 215 9e-54 seq32900 215 9e-54 seq39096 212 1e-52 seq26080 210 4e-52 seq31265 203 6e-50 seq39723 192 1e-46 seq40015 161 2e-37 seq45438 91.5 3e-16 >seq43891 Length=575 Score = 224 bits (248), Expect = 2e-56 Identities = 219/280 (78%), Gaps = 28/280 (10%) Strand=Plus/Plus Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC------TTTGCT---- 115 |||| | ||||| |||||||||||||||||||||||| ||| ||| || Sbjct 141 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCA 200 Query 116 -CGAATACATTAGCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTTGGTTT 171 ||||||||||||||||| ||||| ||||||||| || | ||||||| |||||||| Sbjct 201 CCGAATACATTAGCATGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTT 260 Query 172 ---------CTAGG----ACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 | ||| | | ||||||||||||||||||||| ||||| | | ||| Sbjct 261 TGCTTACAGCGAGGTTATATCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATAT 320 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 | |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| Sbjct 321 TTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCGTTTG 380 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| |||||||||||||||| Sbjct 381 CCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 419 >seq43487 Length=499 Score = 224 bits (248), Expect = 2e-56 Identities = 219/280 (78%), Gaps = 28/280 (10%) Strand=Plus/Plus Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC------TTTGCT---- 115 |||| | ||||| |||||||||||||||||||||||| ||| ||| || Sbjct 186 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCA 245 Query 116 -CGAATACATTAGCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTTGGTTT 171 ||||||||||||||||| ||||| ||||||||| || | ||||||| |||||||| Sbjct 246 CCGAATACATTAGCATGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTT 305 Query 172 ---------CTAGG----ACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 | ||| | | ||||||||||||||||||||| ||||| | | ||| Sbjct 306 TGTTTACAGCGAGGTTATATCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATAT 365 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 | |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| Sbjct 366 TTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCGTTTG 425 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| |||||||||||||||| Sbjct 426 CCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 464 >seq25424 Length=780 Score = 224 bits (248), Expect = 2e-56 Identities = 219/280 (78%), Gaps = 28/280 (10%) Strand=Plus/Plus Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC------TTTGCT---- 115 |||| | ||||| |||||||||||||||||||||||| ||| ||| || Sbjct 301 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCA 360 Query 116 -CGAATACATTAGCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTTGGTTT 171 ||||||||||||||||| ||||| ||||||||| || | ||||||| |||||||| Sbjct 361 CCGAATACATTAGCATGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTT 420 Query 172 ---------CTAGG----ACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 | ||| | | ||||||||||||||||||||| ||||| | | ||| Sbjct 421 TGTTTACAGCGAGGTTATATCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATAT 480 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 | |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| Sbjct 481 TTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCGTTTG 540 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| |||||||||||||||| Sbjct 541 CCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 579 >seq12136 Length=7116 Score = 224 bits (248), Expect = 2e-56 Identities = 219/280 (78%), Gaps = 28/280 (10%) Strand=Plus/Plus Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC------TTTGCT---- 115 |||| | ||||| |||||||||||||||||||||||| ||| ||| || Sbjct 1855 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCA 1914 Query 116 -CGAATACATTAGCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTTGGTTT 171 ||||||||||||||||| ||||| ||||||||| || | ||||||| |||||||| Sbjct 1915 CCGAATACATTAGCATGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTT 1974 Query 172 ---------CTAGG----ACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 | ||| | | ||||||||||||||||||||| ||||| | | ||| Sbjct 1975 TGTTTACAGCGAGGTTATATCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATAT 2034 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 | |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| Sbjct 2035 TTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCGTTTG 2094 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| |||||||||||||||| Sbjct 2095 CCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 2133 >seq43010 Length=440 Score = 217 bits (240), Expect = 3e-54 Identities = 217/279 (78%), Gaps = 27/279 (10%) Strand=Plus/Plus Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC------TTTGCT---- 115 |||| | ||||| |||||||||||||||||||||||| ||| ||| || Sbjct 137 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCA 196 Query 116 -CGAATACATTAGCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTTGT-TGGTTT- 171 ||||||||||||||||| ||||| ||||||||| || | ||||||| |||||| Sbjct 197 CCGAATACATTAGCATGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTGGTTTT 256 Query 172 --------CTAGG----ACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATT 219 | ||| | | ||||||||||||||||||||| ||||| | | |||| Sbjct 257 GTTTACAGCGAGGTTATATCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATT 316 Query 220 CAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCAC 279 |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| | Sbjct 317 TAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCGTTTGC 376 Query 280 CAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||||||||||||||| |||||||||||||||| Sbjct 377 CAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 414 >seq40600 Length=362 Score = 215 bits (238), Expect = 9e-54 Identities = 219/282 (78%), Gaps = 30/282 (11%) Strand=Plus/Minus Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC------TTTGCT---- 115 |||| | ||||| |||||||||||||||||||||||| ||| ||| || Sbjct 351 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGTCC 292 Query 116 --CGAATACATTAGCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTTGGTT 170 ||||||||||||||||| ||||| ||||||||| || | ||||||| ||||||| Sbjct 291 ACCGAATACATTAGCATGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTT 232 Query 171 T---------CTAGG----ACCGCCGTAATGATTAATA-GGGATAGTCGGGGGTGTCAGT 216 | | ||| | | ||||||||||||| |||||||| ||||| | | | Sbjct 231 TTGTTTACAGCGAGGTTATATCAGGGTAATGATTAATAAGGGATAGTTGGGGGCATTAAT 172 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| Sbjct 171 ATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCGTT 112 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| |||||||||||||||| Sbjct 111 TGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 71 >seq32900 Length=373 Score = 215 bits (238), Expect = 9e-54 Identities = 208/265 (78%), Gaps = 28/265 (11%) Strand=Plus/Plus Query 81 TGAAAAAATTAGAGTGTTCAAAGCAGGCC------TTTGCT-----CGAATACATTAGCA 129 |||||||||||||||||||||||| ||| ||| || |||||||||||||| Sbjct 3 TGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCACCGAATACATTAGCA 62 Query 130 TGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTTGGTTT---------CTAGG- 176 ||| ||||| ||||||||| || | ||||||| |||||||| | ||| Sbjct 63 TGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTTTGTTTACAGCGAGGT 122 Query 177 ---ACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 | | ||||||||||||||||||||| ||||| | | |||| ||||||||||||| Sbjct 123 TATATCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGT 182 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 || |||||||||||||| |||| ||||| ||||||||||||| ||||||||||||||| Sbjct 183 GAGATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCGTTTGCCAAGGATGTTTTCA 242 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| |||||||||||||||| Sbjct 243 TTAATCA-AGAACGAAAGTTAGGGG 266 >seq39096 Length=450 Score = 212 bits (234), Expect = 1e-52 Identities = 205/261 (79%), Gaps = 28/261 (11%) Strand=Plus/Plus Query 85 AAAATTAGAGTGTTCAAAGCAGGCC------TTTGCT-----CGAATACATTAGCATGGA 133 |||||||||||||||||||| ||| ||| || ||||||||||||||||| Sbjct 1 AAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCACCGAATACATTAGCATGGG 60 Query 134 ATAATAGAATAGGACG-TGCGGTTCTATTTT--GTTGGTTT---------CTAGG----A 177 ||||| ||||||||| || | ||||||| |||||||| | ||| | Sbjct 61 ATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTTTGTTTACAGCGAGGTTATA 120 Query 178 CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 | ||||||||||||||||||||| ||||| | | |||| ||||||||||||||||| Sbjct 121 TCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGTGAAA 180 Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297 ||||||||||||| |||| ||||| ||||||||||||| ||||||||||||||||||| Sbjct 181 TTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCGTTTGCCAAGGATGTTTTCATTAA 240 Query 298 TCAGTGAACGAAAGTTAGGGG 318 ||| |||||||||||||||| Sbjct 241 TCA-AGAACGAAAGTTAGGGG 260 >seq26080 Length=370 Score = 210 bits (232), Expect = 4e-52 Identities = 207/264 (78%), Gaps = 29/264 (11%) Strand=Plus/Minus Query 83 AAAAAATTAGAGTGTTCAAAGCAGGCC------TTTGCT-----CGAATACATTAGCATG 131 |||||||||||||||||||||| ||| ||| || |||||||||||||||| Sbjct 334 AAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCACCGAATACATTAGCATG 275 Query 132 GAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTTGGTTT---------CTAGG--- 176 | ||||| ||||||||| || | ||||||| |||||||| | ||| Sbjct 274 GGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTTTGTTTACAGCGAGGTTA 215 Query 177 -ACCGCCGTAATG-ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTG 234 | | |||||| ||||||||||||||| ||||| | | |||| |||||||||||||| Sbjct 214 TATCAGGGTAATGGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGTG 155 Query 235 AAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT 294 |||||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||| Sbjct 154 AAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCGTTTGCCAAGGATGTTTTCAT 95 Query 295 TAATCAGTGAACGAAAGTTAGGGG 318 |||||| |||||||||||||||| Sbjct 94 TAATCA-AGAACGAAAGTTAGGGG 72 >seq31265 Length=486 Score = 203 bits (224), Expect = 6e-50 Identities = 211/273 (77%), Gaps = 29/273 (11%) Strand=Plus/Plus Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC------TTTGCT---- 115 |||| | ||||| |||||||||||||||||||||||| ||| ||| || Sbjct 215 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCG 274 Query 116 -CGAATACATTAGCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTTGGTTT 171 ||||||||||||||||| ||||| ||||||||| || | ||||||| |||||||| Sbjct 275 CCGAATACATTAGCATGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTT 334 Query 172 ---------CTAGG----ACCGCCGTAATGATTAATAGGG-ATAGTCGGGGGTGTCAGTA 217 | ||| | | |||||||||||||||| ||||| ||||| | | || Sbjct 335 TGTTTACAGCGAGGTTATATCAGGGTAATGATTAATAGGGGATAGTTGGGGGCATTAATA 394 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 || |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| Sbjct 395 TTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCGTTT 454 Query 278 ACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||||||||||||||||||||| |||||||| Sbjct 455 GCCAAGGATGTTTTCATTAATCA-AGAACGAAA 486 >seq39723 Length=451 Score = 192 bits (212), Expect = 1e-46 Identities = 203/264 (77%), Gaps = 29/264 (11%) Strand=Plus/Minus Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC------TTTGCT---- 115 |||| | ||||| |||||||||||||||||||||||| ||| ||| || Sbjct 267 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCA 208 Query 116 -CGAATACATTAGCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTTGGTTT 171 ||||||||||||||||| ||||| ||||||||| || | ||||||| |||||||| Sbjct 207 CCGAATACATTAGCATGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTT 148 Query 172 ---------CTAGG----ACCGCCGTAATGATT-AATAGGGATAGTCGGGGGTGTCAGTA 217 | ||| | | ||||||||| |||||||||||| ||||| | | || Sbjct 147 TGTTTACAGCGAGGTTATATCAGGGTAATGATTTAATAGGGATAGTTGGGGGCATTAATA 88 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTAC-TGCGAAAGCGTT 276 || |||||||||||||||||||||||||||||| |||| ||||| | |||||||||||| Sbjct 87 TTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATTAACTTCTTGCGAAAGCGTT 28 Query 277 CACCAAGGATGTTTTCATTAATCA 300 |||||||||||||||||||||| Sbjct 27 TGCCAAGGATGTTTTCATTAATCA 4 >seq40015 Length=264 Score = 161 bits (178), Expect = 2e-37 Identities = 112/126 (89%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 ||||||||||| ||||| | | |||| |||||||||||||||||||||||||||||| Sbjct 1 ATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGA 60 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||| ||||| ||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 61 AAGATTAACTTCTGCGAAAGCGTTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGT 119 Query 313 TAGGGG 318 |||||| Sbjct 120 TAGGGG 125 >seq45438 Length=429 Score = 91.5 bits (100), Expect = 3e-16 Identities = 131/184 (71%), Gaps = 27/184 (15%) Strand=Plus/Minus Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC------TTTGCT---- 115 |||| | ||||| |||||||||||||||||||||||| ||| ||| || Sbjct 184 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCA 125 Query 116 -CGAATACATTAGCATGGAATAATAGAATAGGA-CGTGCGGTTCTATTTT--GTTGGTTT 171 ||||||||||||||||| ||||| |||||||| | || | ||||||| |||||||| Sbjct 124 CCGAATACATTAGCATGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTT 65 Query 172 ---------CTAGG----ACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 | ||| | | ||||||||||||||||||||| ||||| | | ||| Sbjct 64 TGTTTACAGCGAGGTTATATCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATAT 5 Query 219 TCAA 222 | || Sbjct 4 TTAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914771695552