Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq22923 185 4e-44 seq12136 149 3e-33 >seq22923 Length=1109 Score = 185 bits (204), Expect = 4e-44 Identities = 239/331 (72%), Gaps = 33/331 (10%) Strand=Plus/Minus Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 ||||||||||| || ||| | | || ||||||||| ||||||||||||||||||||||| Sbjct 449 GGATGCTGGCGGAACGGTGCTGATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACA 390 Query 441 TCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGT----GA-------AC 489 | |||||||| ||||| |||||| | ||||| | |||||| || || Sbjct 389 CGTGCGCGAGTGTCCGGGTGGCAAACCTGGGCGCGGAGTGAAAGCAGAGGATAACATTAC 330 Query 490 GG-------AGGTGGGAACCCGTGAGGGT----------GCACCATCGACCGATCCTGAT 532 || ||||||||| |||||| |||||| || |||| | ||| Sbjct 329 GGTTATCTGAGGTGGGAAG----GAGGGTCACACTTCCTGCACCACCGGCCGACCTGGAT 274 Query 533 GTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATG 592 | | | | || |||| | ||||| || |||||||||||||||||| |||||||||| Sbjct 273 TTTCTTGAAAGG-TTTGCGCTAGAGCGTATTTGTTGGGACCCGAAAGATTGTGAACTATG 215 Query 593 CCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCA 652 ||| ||| |||||||||||||||||||||||||| || || | | ||| |||||| Sbjct 214 GGTGACCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGAAGTGATACTGACGTGCA 155 Query 653 AATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| || || | ||| ||||||||||| Sbjct 154 AATCGTTCATCTGAGTTGCCTATAGGGGCGA 124 Score = 143 bits (158), Expect = 1e-31 Identities = 132/164 (80%), Gaps = 5/164 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 1019 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAAT 960 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAG-TGATCGAAAGATGAAAAGCACTTT 155 |||| || |||||||||||||| ||||||| | ||| ||||| ||||||| ||||| Sbjct 959 ATTGCAAGCGAGAGACCGATAGCGAACAAGTACCGATGAGGGAAAGGTGAAAAGGACTTT 900 Query 156 GGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 | |||||||| | ||||| | |||||||||| ||||||||| Sbjct 899 GAAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAGGGAAGCG 857 >seq12136 Length=7116 Score = 149 bits (164), Expect = 3e-33 Identities = 132/163 (81%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 4439 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAAT 4498 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 |||| || |||||||||||||| ||||||| |||| ||||| ||||||| |||||| Sbjct 4499 ATTGCAAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGGTGAAAAGGACTTTG 4558 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| | ||||| | |||||||||| ||||||||| Sbjct 4559 AAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAGGGAAGCG 4600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078996161450