Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq17828 118 1e-24 seq26024 104 3e-20 >seq17828 Length=17704 Score = 118 bits (130), Expect = 1e-24 Identities = 136/181 (75%), Gaps = 13/181 (7%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| ||| | ||| Sbjct 16399 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCT 16457 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 |||||||||||||||||||||| ||||||||||| | ||| |||| | | Sbjct 16458 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCTGTTACACC-------TATCAATAATT 16510 Query 127 CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAG-TTACGGGGCCATTTTGCCGAATTCCT 185 || | || || || ||||||||||||| |||||| ||||||||||||| ||||| Sbjct 16511 TCTT----ATCAAAGGTACTCCTTCTCCCGAAGTTTACGGAGCCATTTTGCCGAGTTCCT 16566 Query 186 T 186 | Sbjct 16567 T 16567 >seq26024 Length=1138 Score = 104 bits (114), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 14/188 (7%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCG-TATACATCGACTTACCGTCTTCGCAC 60 || || || || ||||||||||| ||||| || ||||||||| || | ||| ||| Sbjct 315 TTGTCTTTTCAGCACCGGGCAGGTGTCAGACCCCTATACATCGTTTTTACAACTTAGCAG 256 Query 61 GGACCTGTGTTTTT-AGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC 119 | ||||||||||| |||||||||||||| ||||||||||| | ||| || Sbjct 255 AGTCCTGTGTTTTTTAGTAAACAGTCGCTACCCTCTATTCTGTTACACC-------TATC 203 Query 120 AACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAG-TTACGGGGCCATTTTGCCG 178 || | | || | || || || ||||||||||||| |||||| |||||||||||| Sbjct 202 AATAATTTCTT----ATCAAAGGTACTCCTTCTCCCGAAGTTTACGGAGCCATTTTGCCG 147 Query 179 AATTCCTT 186 | |||||| Sbjct 146 AGTTCCTT 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694085183127