Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq17828 197 3e-48 seq26024 176 1e-41 seq46201 136 1e-29 seq26025 114 3e-23 seq40230 100 7e-19 seq45601 87.8 5e-15 >seq17828 Length=17704 Score = 197 bits (218), Expect = 3e-48 Identities = 208/273 (76%), Gaps = 7/273 (3%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||||||||||||||| | || |||||||||| | ||||||||| | Sbjct 16213 TATACTGCATCTTCACAGCAAATTTAATTTCACTGGGCTAATACTGGAGACAGTAGGGAA 16272 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 16273 GTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGA 16332 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 ||||||| ||||| |||||||||||| | | || || | | ||||| | || Sbjct 16333 CCGTTATGGTTACAGCCGCCGTTTACTGAGATTTATAT-----TCATGGCGTTTCC--AC 16385 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | | || ||| | |||||||||||| |||| ||||||||| || || | | Sbjct 16386 CACTCCTTTTTGTCTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACT 16445 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 | ||||||| ||||||||||| ||||||||||| Sbjct 16446 TAGCAGAGTCCTGTGTTTTTAGTAAACAGTCGC 16478 >seq26024 Length=1138 Score = 176 bits (194), Expect = 1e-41 Identities = 209/277 (75%), Gaps = 11/277 (4%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||||||||||||||| | || |||||||||| | ||||||||| | Sbjct 497 TATACTGCATCTTCACAGCAAATTTAATTTCACTGGGCTAATACTGGAGACAGTAGGGAA 438 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 437 GTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGA 378 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 ||||||| ||||| |||||||||||| | | || || | | ||||| | || Sbjct 377 CCGTTATGGTTACAGCCGCCGTTTACTGAGATTTATAT-----TCATGGCGTTTCC--AC 325 Query 187 CCCATC-AATTAACCTTCCGGCACCGGGCAGGCGTCACA-CCCTATACGTCCACTTT-CG 243 | | | || | || | |||||||||||| |||| | |||||||| || ||| | Sbjct 324 CACTCCTTTTTGTCTTTTCAGCACCGGGCAGGTGTCAGACCCCTATACATCGTTTTTACA 265 Query 244 TGTTTGCAGAGTGCTGTG-TTTTTAATAAACAGTCGC 279 || ||||||| ||||| |||||| ||||||||||| Sbjct 264 ACTTAGCAGAGTCCTGTGTTTTTTAGTAAACAGTCGC 228 >seq46201 Length=665 Score = 136 bits (150), Expect = 1e-29 Identities = 122/149 (82%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||||||||||||||| | || |||||||||| | ||||||||| | Sbjct 182 TATACTGCATCTTCACAGCAAATTTAATTTCACTGGGCTAATACTGGAGACAGTAGGGAA 123 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAA-GGAATTTCGCTACCTTAGG 125 ||||||| |||||| |||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 122 GTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGGAATTTCGCTACCTTAGG 63 Query 126 ACC-GTTATTGTTACGGCCG-CCGTTTAC 152 ||| ||||| ||||| |||| |||||||| Sbjct 62 ACCGGTTATGGTTACAGCCGTCCGTTTAC 34 >seq26025 Length=635 Score = 114 bits (126), Expect = 3e-23 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||||||||||||||| | || |||||||||| | ||||||||| | Sbjct 118 TATACTGCATCTTCACAGCAAATTTAATTTCACTGGGCTAATACTGGAGACAGTAGGGAA 59 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 124 ||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 58 GTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAG 1 >seq40230 Length=496 Score = 100 bits (110), Expect = 7e-19 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||||||||||||||| | || |||||||||| | ||||||||| | Sbjct 110 TATACTGCATCTTCACAGCAAATTTAATTTCACTGGGCTAATACTGGAGACAGTAGGGAA 51 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGC 116 ||||||| |||||| |||||||||||||| ||||||||||||||||||| Sbjct 50 GTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGC 1 >seq45601 Length=557 Score = 87.8 bits (96), Expect = 5e-15 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||||||||||||||| | || |||||||||| | ||||||||| | Sbjct 103 TATACTGCATCTTCACAGCAAATTTAATTTCACTGGGCTAATACTGGAGACAGTAGGGAA 44 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGA 109 ||||||| |||||| |||||||||||||| |||||||||||| Sbjct 43 GTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260209958208