Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq17828 235 1e-59 seq26024 215 1e-53 seq46201 120 6e-25 seq26025 95.1 3e-17 seq40230 80.6 6e-13 >seq17828 Length=17704 Score = 235 bits (260), Expect = 1e-59 Identities = 273/363 (75%), Gaps = 20/363 (6%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||||| | | || | |||||||| || ||||| Sbjct 16219 GCATCTTCACAGCAAATTTAATTTCACTGGGCTAATACTGGAGACAGTAGGGAAGTCGTT 16278 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 16279 ACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 16338 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 | ||||| |||||||||||||| | ||| |||| || || || | || ||| Sbjct 16339 TGGTTACAGCCGCCGTTTACTGAGATTTATATTCA-TG--GCGTTTCC----ACCACTCC 16391 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 || ||| |||||||||||||| ||||| |||||||||||| || | ||||||||| Sbjct 16392 TTTTTGTCTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCAG 16451 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC-ATA---- 301 | ||||||||||| ||||||||||||| ||||||| | ||| || ||| Sbjct 16452 AGTCCTGTGTTTTTAGTAAACAGTCGCTACCCTCTATTCTGTTACACCTATCAATAATTT 16511 Query 302 -----GACAGGCACCCCTTCTCCCTAAG-TTACGGGGTCATTTTGCCGAGTTCCTTAACA 355 | ||| || ||||||||| ||| |||||| | |||||||||||||||||| || Sbjct 16512 CTTATCAAAGGTACTCCTTCTCCCGAAGTTTACGGAGCCATTTTGCCGAGTTCCTT--CA 16569 Query 356 ATA 358 ||| Sbjct 16570 ATA 16572 >seq26024 Length=1138 Score = 215 bits (238), Expect = 1e-53 Identities = 271/366 (74%), Gaps = 22/366 (6%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||||| | | || | |||||||| || ||||| Sbjct 491 GCATCTTCACAGCAAATTTAATTTCACTGGGCTAATACTGGAGACAGTAGGGAAGTCGTT 432 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 431 ACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 372 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 | ||||| |||||||||||||| | ||| |||| || | || | || | Sbjct 371 TGGTTACAGCCGCCGTTTACTGAGATTTATATTCATGGCGT------TTCCACCACTCCT 318 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAG-CTCCTATACATCG-TCTTGCGACTTAGC 244 || | || |||||||||||||| ||||| | ||||||||||| | || | ||||||| Sbjct 317 TTTTGTCTTTTCAGCACCGGGCAGGTGTCAGACCCCTATACATCGTTTTTACAACTTAGC 258 Query 245 AGAAACCTGTG-TTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC-ATA- 301 ||| |||||| ||||| ||||||||||||| ||||||| | ||| || ||| Sbjct 257 AGAGTCCTGTGTTTTTTAGTAAACAGTCGCTACCCTCTATTCTGTTACACCTATCAATAA 198 Query 302 --------GACAGGCACCCCTTCTCCCTAAG-TTACGGGGTCATTTTGCCGAGTTCCTTA 352 | ||| || ||||||||| ||| |||||| | |||||||||||||||||| Sbjct 197 TTTCTTATCAAAGGTACTCCTTCTCCCGAAGTTTACGGAGCCATTTTGCCGAGTTCCTT- 139 Query 353 ACAATA 358 ||||| Sbjct 138 -CAATA 134 >seq46201 Length=665 Score = 120 bits (132), Expect = 6e-25 Identities = 116/145 (80%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||||| | | || | |||||||| || ||||| Sbjct 176 GCATCTTCACAGCAAATTTAATTTCACTGGGCTAATACTGGAGACAGTAGGGAAGTCGTT 117 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAA-GGAATTTCGCTACCTTAGGACC-GT 124 || || ||| ||| |||||||||| ||||||||| |||||||||||||||||||||| || Sbjct 116 ACACCATTCATGCAGGTCGGAACTCACCCGACAAGGGAATTTCGCTACCTTAGGACCGGT 57 Query 125 TATAGTTACGGCCG-CCGTTTACTG 148 ||| ||||| |||| |||||||||| Sbjct 56 TATGGTTACAGCCGTCCGTTTACTG 32 >seq26025 Length=635 Score = 95.1 bits (104), Expect = 3e-17 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||||| | | || | |||||||| || ||||| Sbjct 112 GCATCTTCACAGCAAATTTAATTTCACTGGGCTAATACTGGAGACAGTAGGGAAGTCGTT 53 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || || ||| ||| |||||||||| ||||||||||||||||||||||||||| Sbjct 52 ACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAG 1 >seq40230 Length=496 Score = 80.6 bits (88), Expect = 6e-13 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||||| | | || | |||||||| || ||||| Sbjct 104 GCATCTTCACAGCAAATTTAATTTCACTGGGCTAATACTGGAGACAGTAGGGAAGTCGTT 45 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGC 110 || || ||| ||| |||||||||| ||||||||||||||||||| Sbjct 44 ACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061902807424