Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq41885 192 9e-47 seq12136 185 1e-44 seq39533 131 3e-28 seq46676 127 3e-27 >seq41885 Length=388 Score = 192 bits (212), Expect = 9e-47 Identities = 112/116 (97%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||| Sbjct 173 TATTTAGCAGGCTAAGGTCTCGTTCGTTAACGGAATAAACCAGACAAATCGCTCCACCAA 114 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 113 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 58 Score = 80.6 bits (88), Expect = 4e-13 Identities = 67/84 (80%), Gaps = 10/84 (12%) Strand=Plus/Minus Query 43 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC------ 96 ||||||||||||||||||||||||||||||||||||||||| ||||| | || Sbjct 388 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGCTGGCTAAACGCTTTAAA 329 Query 97 ----CAATAGTCCCTCTAAGAAGC 116 || |||||||||||||||| Sbjct 328 TAATCAGCAGTCCCTCTAAGAAGC 305 >seq12136 Length=7116 Score = 185 bits (204), Expect = 1e-44 Identities = 112/117 (96%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCA-CCA 201 ||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||| ||| Sbjct 2540 TATTTAGCAGGCTAAGGTCTCGTTCGTTAACGGAATAAACCAGACAAATCGCTCCAACCA 2481 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2480 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 2424 Score = 131 bits (144), Expect = 3e-28 Identities = 103/125 (82%), Gaps = 10/125 (8%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2797 ACTCGTTGGATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 2738 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC----------CAATAGTCCCTCTAA 111 |||||||||||||||||||||| ||||| | || || ||||||||||| Sbjct 2737 CCTGTTATTGCCTCAAACTTCCGCTGGCTAAACGCTTTAAATAATCAGCAGTCCCTCTAA 2678 Query 112 GAAGC 116 ||||| Sbjct 2677 GAAGC 2673 >seq39533 Length=343 Score = 131 bits (144), Expect = 3e-28 Identities = 103/125 (82%), Gaps = 10/125 (8%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26 ACTCGTTGGATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 85 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC----------CAATAGTCCCTCTAA 111 |||||||||||||||||||||| ||||| | || || ||||||||||| Sbjct 86 CCTGTTATTGCCTCAAACTTCCGCTGGCTAAACGCTTTAAATAATCAGCAGTCCCTCTAA 145 Query 112 GAAGC 116 ||||| Sbjct 146 GAAGC 150 Score = 95.1 bits (104), Expect = 2e-17 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||| Sbjct 282 TATTTAGCAGGCTAAGGTCTCGTTCGTTAACGGAATAAACCAGACAAATCGCTCCACCAA 341 Query 203 CT 204 || Sbjct 342 CT 343 >seq46676 Length=424 Score = 127 bits (140), Expect = 3e-27 Identities = 102/125 (82%), Gaps = 10/125 (8%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 138 ACTCGTTGGATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 197 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC----------CAATAGTCCCTCTAA 111 |||||||| ||||||||||||| ||||| | || || ||||||||||| Sbjct 198 CCTGTTATCGCCTCAAACTTCCGCTGGCTAAACGCTTTAAATAATCAGCAGTCCCTCTAA 257 Query 112 GAAGC 116 ||||| Sbjct 258 GAAGC 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796438758519