Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq24025 199 7e-49 seq10214 163 5e-38 seq20925 111 3e-22 seq28216 82.4 1e-13 >seq24025 Length=848 Score = 199 bits (220), Expect = 7e-49 Identities = 122/129 (95%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCAC--GTTCCCT 89 ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 129 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACACGTTCCCT 70 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 69 ATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCG 10 Query 150 ACATCGAAG 158 ||||||||| Sbjct 9 ACATCGAAG 1 >seq10214 Length=3837 Score = 163 bits (180), Expect = 5e-38 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 ||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| | Sbjct 2611 GGTGAACAATCCAACGCTTGGCGAATTCTGCTTCACAATGATAGGAAGAGCCAACATCAA 2670 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 ||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| Sbjct 2671 AGGATCAAAAAGCAACGTCACTATGAACGCTTGGCCACCACAAGCCAGTTATTCCTGT 2728 >seq20925 Length=1308 Score = 111 bits (122), Expect = 3e-22 Identities = 89/109 (82%), Gaps = 9/109 (8%) Strand=Plus/Minus Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG---- 249 |||||||||||||||||||||||||||||||||| |||||||||| |||||| || Sbjct 1308 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATCCCGAAAT 1249 Query 250 -----AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || ||||||||||||||||||| |||||| |||||||||| Sbjct 1248 AAAAAAGACTCTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 1200 >seq28216 Length=515 Score = 82.4 bits (90), Expect = 1e-13 Identities = 73/93 (78%), Gaps = 9/93 (10%) Strand=Plus/Minus Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG---------AGGGACTAAAG 260 |||||||||||||||||| |||||||||| |||||| || || |||||| Sbjct 515 CCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATCCCGAAATAAAAAAGACTCTAAAG 456 Query 261 GATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||||| |||||| |||||||||| Sbjct 455 GATCGATAGGCCATGCTTTCACAGTTTGTATTC 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854000149344