Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04-
21] 46,799 sequences; 74,697,533 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq26024 118 1e-24
seq17828 118 1e-24
seq46201 105 7e-21
seq26025 104 3e-20
seq40230 89.7 6e-16
seq45601 77.0 4e-12
>seq26024
Length=1138
Score = 118 bits (130), Expect = 1e-24
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| ||||| ||| || | |||||||||| | | | |||||||||| |
Sbjct 520 GGGTCTTTCCGTCCAATCATTTCTATACTGCATCTTCACAGCAAATTTAATTTCACTGGG 461
Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144
|| | | ||||||| |||||||||| |||||||||||||| ||||||
Sbjct 460 CTAATACTGGAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGA 401
Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||||||
Sbjct 400 CAAGGAATTTCGCTACCTTAGGACCGTTA 372
>seq17828
Length=17704
Score = 118 bits (130), Expect = 1e-24
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| ||||| ||| || | |||||||||| | | | |||||||||| |
Sbjct 16190 GGGTCTTTCCGTCCAATCATTTCTATACTGCATCTTCACAGCAAATTTAATTTCACTGGG 16249
Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144
|| | | ||||||| |||||||||| |||||||||||||| ||||||
Sbjct 16250 CTAATACTGGAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGA 16309
Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||||||
Sbjct 16310 CAAGGAATTTCGCTACCTTAGGACCGTTA 16338
>seq46201
Length=665
Score = 105 bits (116), Expect = 7e-21
Identities = 110/147 (75%), Gaps = 1/147 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| ||||| ||| || | |||||||||| | | | |||||||||| |
Sbjct 205 GGGTCTTTCCGTCCAATCATTTCTATACTGCATCTTCACAGCAAATTTAATTTCACTGGG 146
Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144
|| | | ||||||| |||||||||| |||||||||||||| ||||||
Sbjct 145 CTAATACTGGAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGA 86
Query 145 CAA-GGAATTTCGCTACCTTAGGACCG 170
||| |||||||||||||||||||||||
Sbjct 85 CAAGGGAATTTCGCTACCTTAGGACCG 59
>seq26025
Length=635
Score = 104 bits (114), Expect = 3e-20
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| ||||| ||| || | |||||||||| | | | |||||||||| |
Sbjct 141 GGGTCTTTCCGTCCAATCATTTCTATACTGCATCTTCACAGCAAATTTAATTTCACTGGG 82
Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144
|| | | ||||||| |||||||||| |||||||||||||| ||||||
Sbjct 81 CTAATACTGGAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGA 22
Query 145 CAAGGAATTTCGCTACCTTAG 165
|||||||||||||||||||||
Sbjct 21 CAAGGAATTTCGCTACCTTAG 1
>seq40230
Length=496
Score = 89.7 bits (98), Expect = 6e-16
Identities = 97/133 (73%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| ||||| ||| || | |||||||||| | | | |||||||||| |
Sbjct 133 GGGTCTTTCCGTCCAATCATTTCTATACTGCATCTTCACAGCAAATTTAATTTCACTGGG 74
Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144
|| | | ||||||| |||||||||| |||||||||||||| ||||||
Sbjct 73 CTAATACTGGAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGA 14
Query 145 CAAGGAATTTCGC 157
|||||||||||||
Sbjct 13 CAAGGAATTTCGC 1
>seq45601
Length=557
Score = 77.0 bits (84), Expect = 4e-12
Identities = 90/126 (71%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| ||||| ||| || | |||||||||| | | | |||||||||| |
Sbjct 126 GGGTCTTTCCGTCCAATCATTTCTATACTGCATCTTCACAGCAAATTTAATTTCACTGGG 67
Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144
|| | | ||||||| |||||||||| |||||||||||||| ||||||
Sbjct 66 CTAATACTGGAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGA 7
Query 145 CAAGGA 150
||||||
Sbjct 6 CAAGGA 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546951918501
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |