Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq45438 80.6 3e-13 seq43891 80.6 3e-13 seq43487 80.6 3e-13 seq39723 80.6 3e-13 seq31265 80.6 3e-13 seq25424 80.6 3e-13 seq12136 80.6 3e-13 seq43010 77.0 4e-12 seq40600 75.2 1e-11 >seq45438 Length=429 Score = 80.6 bits (88), Expect = 3e-13 Identities = 92/120 (77%), Gaps = 14/120 (12%) Strand=Plus/Plus Query 10 AAACCAAC--AAAATAGGGACGCACG-TCCTATTCTATTATTCCATGCTAATGTATTCG- 65 |||||||| |||||||| || | |||||||| ||||| ||||||||||||||||| Sbjct 65 AAACCAACTGAAAATAGGAGGTCAGGGTCCTATTCCATTATCCCATGCTAATGTATTCGG 124 Query 66 -GGC-GTAA--------GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 ||| | || ||| |||||||||||||||||||| ||| |||||| | |||| Sbjct 125 TGGCAGGAAAAATATCTGCCCGCTTTGAACACTCTAATTTTTTCACGGTAAACGATCTGG 184 >seq43891 Length=575 Score = 80.6 bits (88), Expect = 3e-13 Identities = 92/120 (77%), Gaps = 14/120 (12%) Strand=Plus/Minus Query 10 AAACCAAC--AAAATAGGGACGCACG-TCCTATTCTATTATTCCATGCTAATGTATTCG- 65 |||||||| |||||||| || | |||||||| ||||| ||||||||||||||||| Sbjct 260 AAACCAACTGAAAATAGGAGGTCAGGGTCCTATTCCATTATCCCATGCTAATGTATTCGG 201 Query 66 -GGC-GTAA--------GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 ||| | || ||| |||||||||||||||||||| ||| |||||| | |||| Sbjct 200 TGGCAGGAAAAATATCTGCCCGCTTTGAACACTCTAATTTTTTCACGGTAAACGATCTGG 141 >seq43487 Length=499 Score = 80.6 bits (88), Expect = 3e-13 Identities = 92/120 (77%), Gaps = 14/120 (12%) Strand=Plus/Minus Query 10 AAACCAAC--AAAATAGGGACGCACG-TCCTATTCTATTATTCCATGCTAATGTATTCG- 65 |||||||| |||||||| || | |||||||| ||||| ||||||||||||||||| Sbjct 305 AAACCAACTGAAAATAGGAGGTCAGGGTCCTATTCCATTATCCCATGCTAATGTATTCGG 246 Query 66 -GGC-GTAA--------GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 ||| | || ||| |||||||||||||||||||| ||| |||||| | |||| Sbjct 245 TGGCAGGAAAAATATCTGCCCGCTTTGAACACTCTAATTTTTTCACGGTAAACGATCTGG 186 >seq39723 Length=451 Score = 80.6 bits (88), Expect = 3e-13 Identities = 92/120 (77%), Gaps = 14/120 (12%) Strand=Plus/Plus Query 10 AAACCAAC--AAAATAGGGACGCACG-TCCTATTCTATTATTCCATGCTAATGTATTCG- 65 |||||||| |||||||| || | |||||||| ||||| ||||||||||||||||| Sbjct 148 AAACCAACTGAAAATAGGAGGTCAGGGTCCTATTCCATTATCCCATGCTAATGTATTCGG 207 Query 66 -GGC-GTAA--------GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 ||| | || ||| |||||||||||||||||||| ||| |||||| | |||| Sbjct 208 TGGCAGGAAAAATATCTGCCCGCTTTGAACACTCTAATTTTTTCACGGTAAACGATCTGG 267 >seq31265 Length=486 Score = 80.6 bits (88), Expect = 3e-13 Identities = 92/120 (77%), Gaps = 14/120 (12%) Strand=Plus/Minus Query 10 AAACCAAC--AAAATAGGGACGCACG-TCCTATTCTATTATTCCATGCTAATGTATTCG- 65 |||||||| |||||||| || | |||||||| ||||| ||||||||||||||||| Sbjct 334 AAACCAACTGAAAATAGGAGGTCAGGGTCCTATTCCATTATCCCATGCTAATGTATTCGG 275 Query 66 -GGC-GTAA--------GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 ||| | || ||| |||||||||||||||||||| ||| |||||| | |||| Sbjct 274 CGGCAGGAAAAATATCTGCCCGCTTTGAACACTCTAATTTTTTCACGGTAAACGATCTGG 215 >seq25424 Length=780 Score = 80.6 bits (88), Expect = 3e-13 Identities = 92/120 (77%), Gaps = 14/120 (12%) Strand=Plus/Minus Query 10 AAACCAAC--AAAATAGGGACGCACG-TCCTATTCTATTATTCCATGCTAATGTATTCG- 65 |||||||| |||||||| || | |||||||| ||||| ||||||||||||||||| Sbjct 420 AAACCAACTGAAAATAGGAGGTCAGGGTCCTATTCCATTATCCCATGCTAATGTATTCGG 361 Query 66 -GGC-GTAA--------GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 ||| | || ||| |||||||||||||||||||| ||| |||||| | |||| Sbjct 360 TGGCAGGAAAAATATCTGCCCGCTTTGAACACTCTAATTTTTTCACGGTAAACGATCTGG 301 >seq12136 Length=7116 Score = 80.6 bits (88), Expect = 3e-13 Identities = 92/120 (77%), Gaps = 14/120 (12%) Strand=Plus/Minus Query 10 AAACCAAC--AAAATAGGGACGCACG-TCCTATTCTATTATTCCATGCTAATGTATTCG- 65 |||||||| |||||||| || | |||||||| ||||| ||||||||||||||||| Sbjct 1974 AAACCAACTGAAAATAGGAGGTCAGGGTCCTATTCCATTATCCCATGCTAATGTATTCGG 1915 Query 66 -GGC-GTAA--------GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 ||| | || ||| |||||||||||||||||||| ||| |||||| | |||| Sbjct 1914 TGGCAGGAAAAATATCTGCCCGCTTTGAACACTCTAATTTTTTCACGGTAAACGATCTGG 1855 >seq43010 Length=440 Score = 77.0 bits (84), Expect = 4e-12 Identities = 74/94 (79%), Gaps = 11/94 (12%) Strand=Plus/Minus Query 33 GTCCTATTCTATTATTCCATGCTAATGTATTCG--GGC-GTAA--------GCCTGCTTT 81 ||||||||| ||||| ||||||||||||||||| ||| | || ||| ||||| Sbjct 230 GTCCTATTCCATTATCCCATGCTAATGTATTCGGTGGCAGGAAAAATATCTGCCCGCTTT 171 Query 82 GAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 ||||||||||||||| ||| |||||| | |||| Sbjct 170 GAACACTCTAATTTTTTCACGGTAAACGATCTGG 137 >seq40600 Length=362 Score = 75.2 bits (82), Expect = 1e-11 Identities = 89/121 (74%), Gaps = 15/121 (12%) Strand=Plus/Plus Query 10 AAACCAAC--AAAATAGGGACGCACG-TCCTATTCTATTATTCCATGCTAATGTATTCGG 66 |||||||| |||||||| || | |||||||| ||||| |||||||||||||||||| Sbjct 231 AAACCAACTGAAAATAGGAGGTCAGGGTCCTATTCCATTATCCCATGCTAATGTATTCGG 290 Query 67 GCGTAAG------------CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTG 114 | || || |||||||||||||||||||| ||| |||||| | ||| Sbjct 291 TGGACAGGAAAAATATCTGCCCGCTTTGAACACTCTAATTTTTTCACGGTAAACGATCTG 350 Query 115 G 115 | Sbjct 351 G 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594930156966