Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq43891 109 6e-22 seq43487 109 6e-22 seq25424 109 6e-22 seq12136 109 6e-22 seq43010 105 7e-21 seq39723 102 8e-20 seq31265 102 8e-20 seq40600 100 3e-19 seq32900 100 3e-19 seq39096 96.9 4e-18 seq26080 95.1 1e-17 >seq43891 Length=575 Score = 109 bits (120), Expect = 6e-22 Identities = 151/212 (71%), Gaps = 26/212 (12%) Strand=Plus/Plus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC------TTTGCT---- 54 |||| | ||||| |||||||||||||| ||||||||| ||| ||| || Sbjct 141 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCA 200 Query 55 -CGAATACATTACCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTAGGTTT 110 ||||||||||| ||||| ||||| ||||||||| || | ||||||| || ||||| Sbjct 201 CCGAATACATTAGCATGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTT 260 Query 111 CTAGGACCGCCCG------------TAATGATAAATACGGATAGTCGGGGGTGTCAGTAT 158 || || | ||||||| |||| ||||||| ||||| | | ||| Sbjct 261 TGCTTACAGCGAGGTTATATCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATAT 320 Query 159 TCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | |||||||| ||||||||||||||||||||| Sbjct 321 TTAATTGTCAGAGGTGAAATTCTTGGATTTAT 352 >seq43487 Length=499 Score = 109 bits (120), Expect = 6e-22 Identities = 151/212 (71%), Gaps = 26/212 (12%) Strand=Plus/Plus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC------TTTGCT---- 54 |||| | ||||| |||||||||||||| ||||||||| ||| ||| || Sbjct 186 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCA 245 Query 55 -CGAATACATTACCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTAGGTTT 110 ||||||||||| ||||| ||||| ||||||||| || | ||||||| || ||||| Sbjct 246 CCGAATACATTAGCATGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTT 305 Query 111 CTAGGACCGCCCG------------TAATGATAAATACGGATAGTCGGGGGTGTCAGTAT 158 || || | ||||||| |||| ||||||| ||||| | | ||| Sbjct 306 TGTTTACAGCGAGGTTATATCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATAT 365 Query 159 TCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | |||||||| ||||||||||||||||||||| Sbjct 366 TTAATTGTCAGAGGTGAAATTCTTGGATTTAT 397 >seq25424 Length=780 Score = 109 bits (120), Expect = 6e-22 Identities = 151/212 (71%), Gaps = 26/212 (12%) Strand=Plus/Plus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC------TTTGCT---- 54 |||| | ||||| |||||||||||||| ||||||||| ||| ||| || Sbjct 301 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCA 360 Query 55 -CGAATACATTACCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTAGGTTT 110 ||||||||||| ||||| ||||| ||||||||| || | ||||||| || ||||| Sbjct 361 CCGAATACATTAGCATGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTT 420 Query 111 CTAGGACCGCCCG------------TAATGATAAATACGGATAGTCGGGGGTGTCAGTAT 158 || || | ||||||| |||| ||||||| ||||| | | ||| Sbjct 421 TGTTTACAGCGAGGTTATATCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATAT 480 Query 159 TCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | |||||||| ||||||||||||||||||||| Sbjct 481 TTAATTGTCAGAGGTGAAATTCTTGGATTTAT 512 >seq12136 Length=7116 Score = 109 bits (120), Expect = 6e-22 Identities = 151/212 (71%), Gaps = 26/212 (12%) Strand=Plus/Plus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC------TTTGCT---- 54 |||| | ||||| |||||||||||||| ||||||||| ||| ||| || Sbjct 1855 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCA 1914 Query 55 -CGAATACATTACCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTAGGTTT 110 ||||||||||| ||||| ||||| ||||||||| || | ||||||| || ||||| Sbjct 1915 CCGAATACATTAGCATGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTT 1974 Query 111 CTAGGACCGCCCG------------TAATGATAAATACGGATAGTCGGGGGTGTCAGTAT 158 || || | ||||||| |||| ||||||| ||||| | | ||| Sbjct 1975 TGTTTACAGCGAGGTTATATCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATAT 2034 Query 159 TCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | |||||||| ||||||||||||||||||||| Sbjct 2035 TTAATTGTCAGAGGTGAAATTCTTGGATTTAT 2066 >seq43010 Length=440 Score = 105 bits (116), Expect = 7e-21 Identities = 151/211 (72%), Gaps = 25/211 (12%) Strand=Plus/Plus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC------TTTGCT---- 54 |||| | ||||| |||||||||||||| ||||||||| ||| ||| || Sbjct 137 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCA 196 Query 55 -CGAATACATTACCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTAGGTTT 110 ||||||||||| ||||| ||||| ||||||||| || | ||||||| || | ||| Sbjct 197 CCGAATACATTAGCATGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTGGTTTT 256 Query 111 CT--------AGGACCGCCC---GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATT 159 | ||| | |||||||| |||| ||||||| ||||| | | |||| Sbjct 257 GTTTACAGCGAGGTTATATCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATT 316 Query 160 CAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 |||||||| ||||||||||||||||||||| Sbjct 317 TAATTGTCAGAGGTGAAATTCTTGGATTTAT 347 >seq39723 Length=451 Score = 102 bits (112), Expect = 8e-20 Identities = 151/213 (71%), Gaps = 27/213 (13%) Strand=Plus/Minus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC------TTTGCT---- 54 |||| | ||||| |||||||||||||| ||||||||| ||| ||| || Sbjct 267 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCA 208 Query 55 -CGAATACATTACCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTAGGTTT 110 ||||||||||| ||||| ||||| ||||||||| || | ||||||| || ||||| Sbjct 207 CCGAATACATTAGCATGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTT 148 Query 111 CTAGGACCGCCCG------------TAATGATA-AATACGGATAGTCGGGGGTGTCAGTA 157 || || | ||||||| |||| ||||||| ||||| | | || Sbjct 147 TGTTTACAGCGAGGTTATATCAGGGTAATGATTTAATAGGGATAGTTGGGGGCATTAATA 88 Query 158 TTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 || |||||||| ||||||||||||||||||||| Sbjct 87 TTTAATTGTCAGAGGTGAAATTCTTGGATTTAT 55 >seq31265 Length=486 Score = 102 bits (112), Expect = 8e-20 Identities = 151/213 (71%), Gaps = 27/213 (13%) Strand=Plus/Plus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC------TTTGCT---- 54 |||| | ||||| |||||||||||||| ||||||||| ||| ||| || Sbjct 215 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCG 274 Query 55 -CGAATACATTACCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTAGGTTT 110 ||||||||||| ||||| ||||| ||||||||| || | ||||||| || ||||| Sbjct 275 CCGAATACATTAGCATGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTT 334 Query 111 CTAGGACCGCCCG------------TAATGATAAATACGG-ATAGTCGGGGGTGTCAGTA 157 || || | ||||||| |||| || ||||| ||||| | | || Sbjct 335 TGTTTACAGCGAGGTTATATCAGGGTAATGATTAATAGGGGATAGTTGGGGGCATTAATA 394 Query 158 TTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 || |||||||| ||||||||||||||||||||| Sbjct 395 TTTAATTGTCAGAGGTGAAATTCTTGGATTTAT 427 >seq40600 Length=362 Score = 100 bits (110), Expect = 3e-19 Identities = 151/214 (71%), Gaps = 28/214 (13%) Strand=Plus/Minus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC------TTTGCT---- 54 |||| | ||||| |||||||||||||| ||||||||| ||| ||| || Sbjct 351 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGTCC 292 Query 55 --CGAATACATTACCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTAGGTT 109 ||||||||||| ||||| ||||| ||||||||| || | ||||||| || |||| Sbjct 291 ACCGAATACATTAGCATGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTT 232 Query 110 TCTAGGACCGCCCG------------TAATGATAAATACGG-ATAGTCGGGGGTGTCAGT 156 | || || | ||||||| |||| || ||||| ||||| | | | Sbjct 231 TTGTTTACAGCGAGGTTATATCAGGGTAATGATTAATAAGGGATAGTTGGGGGCATTAAT 172 Query 157 ATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| |||||||| ||||||||||||||||||||| Sbjct 171 ATTTAATTGTCAGAGGTGAAATTCTTGGATTTAT 138 >seq32900 Length=373 Score = 100 bits (110), Expect = 3e-19 Identities = 140/197 (71%), Gaps = 26/197 (13%) Strand=Plus/Plus Query 20 TGAAAAAATTAGAGCGTTCAAAGCAGGCC------TTTGCT-----CGAATACATTACCA 68 |||||||||||||| ||||||||| ||| ||| || ||||||||||| || Sbjct 3 TGAAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCACCGAATACATTAGCA 62 Query 69 TGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTAGGTTTCTAGGACCGCCCG-- 123 ||| ||||| ||||||||| || | ||||||| || ||||| || || | Sbjct 63 TGGGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTTTGTTTACAGCGAGGT 122 Query 124 ----------TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGT 173 ||||||| |||| ||||||| ||||| | | |||| |||||||| |||| Sbjct 123 TATATCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGT 182 Query 174 GAAATTCTTGGATTTAT 190 || |||||||||||||| Sbjct 183 GAGATTCTTGGATTTAT 199 >seq39096 Length=450 Score = 96.9 bits (106), Expect = 4e-18 Identities = 137/193 (71%), Gaps = 26/193 (13%) Strand=Plus/Plus Query 24 AAAATTAGAGCGTTCAAAGCAGGCC------TTTGCT-----CGAATACATTACCATGGA 72 |||||||||| ||||||||| ||| ||| || ||||||||||| ||||| Sbjct 1 AAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCACCGAATACATTAGCATGGG 60 Query 73 ATAATAGAATAGGACG-TGCGGTTCTATTTT--GTAGGTTTCTAGGACCGCCCG------ 123 ||||| ||||||||| || | ||||||| || ||||| || || | Sbjct 61 ATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTTTGTTTACAGCGAGGTTATA 120 Query 124 ------TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 ||||||| |||| ||||||| ||||| | | |||| |||||||| |||||||| Sbjct 121 TCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGTGAAA 180 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 181 TTCTTGGATTTAT 193 >seq26080 Length=370 Score = 95.1 bits (104), Expect = 1e-17 Identities = 139/196 (71%), Gaps = 27/196 (14%) Strand=Plus/Minus Query 22 AAAAAATTAGAGCGTTCAAAGCAGGCC------TTTGCT-----CGAATACATTACCATG 70 |||||||||||| ||||||||| ||| ||| || ||||||||||| |||| Sbjct 334 AAAAAATTAGAGTGTTCAAAGCGGGCAGATATTTTTCCTGCCACCGAATACATTAGCATG 275 Query 71 GAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTAGGTTTCTAGGACCGCCCG---- 123 | ||||| ||||||||| || | ||||||| || ||||| || || | Sbjct 274 GGATAATGGAATAGGACCCTGACCTCCTATTTTCAGTTGGTTTTGTTTACAGCGAGGTTA 215 Query 124 --------TAATG-ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTG 174 ||||| || |||| ||||||| ||||| | | |||| |||||||| ||||| Sbjct 214 TATCAGGGTAATGGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGTG 155 Query 175 AAATTCTTGGATTTAT 190 |||||||||||||||| Sbjct 154 AAATTCTTGGATTTAT 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511767876960