Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq29943 129 9e-28 seq17828 129 9e-28 seq26024 123 4e-26 seq40822 82.4 1e-13 >seq29943 Length=1412 Score = 129 bits (142), Expect = 9e-28 Identities = 102/121 (84%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTT-CTGAACCCAGCTCGCGTGCCTCTTTAA 214 ||| |||||| ||||||||||||| ||||||| || |||||| ||| ||| || |||||| Sbjct 817 GACAGATAGGAACCGAACTGTCTCACGACGTTTCTAAACCCAACTCACGTACCACTTTAA 876 Query 215 TGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATC 274 | ||||||||||| ||||||||| ||| || |||| |||||||| || ||| ||||||| Sbjct 877 TAGGCGAACAGCCTAACCCTTGGAACCGCCTACAGCTCCAGGATGTGATGAGTCGACATC 936 Query 275 G 275 | Sbjct 937 G 937 >seq17828 Length=17704 Score = 129 bits (142), Expect = 9e-28 Identities = 102/121 (84%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTT-CTGAACCCAGCTCGCGTGCCTCTTTAA 214 ||| |||||| ||||||||||||| ||||||| || |||||| ||| ||| || |||||| Sbjct 15644 GACAGATAGGAACCGAACTGTCTCACGACGTTTCTAAACCCAACTCACGTACCACTTTAA 15703 Query 215 TGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATC 274 | ||||||||||| ||||||||| ||| || |||| |||||||| || ||| ||||||| Sbjct 15704 TAGGCGAACAGCCTAACCCTTGGAACCGCCTACAGCTCCAGGATGTGATGAGTCGACATC 15763 Query 275 G 275 | Sbjct 15764 G 15764 >seq26024 Length=1138 Score = 123 bits (136), Expect = 4e-26 Identities = 100/120 (83%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| || |||||| |||||| ||| ||| || ||| ||| Sbjct 1064 GACAGATAGGAACCGAACTGTCTCACGGCGTTCTAAACCCAACTCACGTACCACTT-AAT 1006 Query 216 GGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||||| ||||||||| ||| || |||| |||||||| || ||| |||||||| Sbjct 1005 AGGCGAACAGCCTAACCCTTGGAACCGCCTACAGCTCCAGGATGTGATGAGTCGACATCG 946 >seq40822 Length=928 Score = 82.4 bits (90), Expect = 1e-13 Identities = 101/136 (74%), Gaps = 16/136 (12%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAAC---CCAGCTC-GCGT--GCCTC 209 ||| |||||| ||||||||||||| ||||||||| | | ||| ||| ||| || | Sbjct 143 GACAGATAGGAACCGAACTGTCTCACGACGTTCTAAMCCMMCCAACTCACCGTACCCCAC 84 Query 210 TTT--------AATGGGCGAACAGCCCAACCCTTGGGAC--CTACTTCAGCCCCAGGATG 259 ||| ||| ||||||||||| ||||||||| || | || |||| |||||||| Sbjct 83 TTTAATAGGCGAATAGGCGAACAGCCTAACCCTTGGAACCGCCCCTACAGCTCCAGGATG 24 Query 260 AGACGAGCCGACATCG 275 || ||| |||||||| Sbjct 23 TGATGAGTCGACATCG 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780446012364