Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq39272 172 1e-40 seq12136 172 1e-40 seq46188 154 3e-35 seq39533 131 3e-28 seq46676 125 1e-26 seq41885 75.2 2e-11 >seq39272 Length=516 Score = 172 bits (190), Expect = 1e-40 Identities = 121/138 (88%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| |||||||||| ||| | |||||||||||||||| ||||| Sbjct 64 CCTGGGCCGATAGGTCCGGGTAATCTTTGCAAATTTAATCGTGCTGGGGATAGATCATTG 123 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||| Sbjct 124 TAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATT 183 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 184 ACGTCCCTGCCCTTTGTA 201 >seq12136 Length=7116 Score = 172 bits (190), Expect = 1e-40 Identities = 121/138 (88%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| |||||||||| ||| | |||||||||||||||| ||||| Sbjct 2864 CCTGGGCCGATAGGTCCGGGTAATCTTTGCAAATTTAATCGTGCTGGGGATAGATCATTG 2923 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||| Sbjct 2924 TAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATT 2983 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 2984 ACGTCCCTGCCCTTTGTA 3001 Score = 131 bits (144), Expect = 3e-28 Identities = 78/82 (95%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2716 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 2775 Query 163 TACACTGACAGAGCCAACGAGT 184 |||||||| | ||||||||| Sbjct 2776 TACACTGATTAATCCAACGAGT 2797 >seq46188 Length=352 Score = 154 bits (170), Expect = 3e-35 Identities = 94/100 (94%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 |||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||| Sbjct 17 TCGTGCTGGGGATAGATCATTGTAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGC 76 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||||| |||||||||||||||||||||||||||| Sbjct 77 GAGTCATCAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 116 >seq39533 Length=343 Score = 131 bits (144), Expect = 3e-28 Identities = 78/82 (95%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 107 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 48 Query 163 TACACTGACAGAGCCAACGAGT 184 |||||||| | ||||||||| Sbjct 47 TACACTGATTAATCCAACGAGT 26 >seq46676 Length=424 Score = 125 bits (138), Expect = 1e-26 Identities = 77/82 (94%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 219 GGAAGTTTGAGGCGATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 160 Query 163 TACACTGACAGAGCCAACGAGT 184 |||||||| | ||||||||| Sbjct 159 TACACTGATTAATCCAACGAGT 138 >seq41885 Length=388 Score = 75.2 bits (82), Expect = 2e-11 Identities = 41/41 (100%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATG 143 ||||||||||||||||||||||||||||||||||||||||| Sbjct 348 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATG 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946756719872