Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq20925 466 6e-129 seq28216 134 5e-29 >seq20925 Length=1308 Score = 466 bits (516), Expect = 6e-129 Identities = 286/302 (95%), Gaps = 2/302 (1%) Strand=Plus/Minus Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 || |||||||||||||||| |||| |||||||||||||| ||||||||||||||||| Sbjct 849 CGCCTCCCACTTATTCTACGCCTCCAGCGTCATTTCACAAAGCCGGACTAGAGTCAAGCT 790 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 789 CAACAGGGTCTTCTTTCCCCGCTGATCGTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 730 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 729 TGGGTGGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 670 Query 414 ATGACGAGGCATTTGGCTACCTTAA-GAGAGT-CATAGTTACTCCCGCCGTTTACCCGCG 471 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 669 ATGACGAGGCATTTGGCTACCTTAAGGAGAGTCCATAGTTACTCCCGCCGTTTACCCGCG 610 Query 472 CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 609 CTTGGTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 550 Query 532 CA 533 || Sbjct 549 CA 548 Score = 143 bits (158), Expect = 9e-32 Identities = 100/114 (88%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 1166 CTTTTGTTCCACATGAGATTTCTGTTCTCATTGAGCTCATCTTAGGACACCTGCGTTATC 1107 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACC 120 |||||||||||||||||||||||||||||||||||||||| ||||| || ||| Sbjct 1106 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCCTCGACC 1053 >seq28216 Length=515 Score = 134 bits (148), Expect = 5e-29 Identities = 99/114 (87%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 389 CTTTTGTTCCACATGAGATTTCTGTTCTCATTGAGCTCATCTTAGGACACCTGCGTTATC 330 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACC 120 |||||||||||||||| ||||||||||||||||||||||| ||||| || ||| Sbjct 329 TTTTAACAGATGTGCCG-CCCAGCCAAACTCCCCACCTGACTATGTCCTCGACC 277 Score = 102 bits (112), Expect = 3e-19 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 || |||||||||||||||| |||| |||||||||||||| ||||||||||||||||| Sbjct 74 CGCCTCCCACTTATTCTACGCCTCCAGCGTCATTTCACAAAGCCGGACTAGAGTCAAGCT 15 Query 294 CAACAGGGTCTTCT 307 |||||||||||||| Sbjct 14 CAACAGGGTCTTCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634434742752