Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq17828 150 6e-34 seq26024 145 3e-32 seq46201 131 6e-28 seq26025 114 4e-23 seq40230 100 1e-18 seq45601 87.8 6e-15 >seq17828 Length=17704 Score = 150 bits (166), Expect = 6e-34 Identities = 160/215 (74%), Gaps = 17/215 (8%) Strand=Plus/Plus Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCG 409 |||||||| |||| | | ||||||| |||| ||||||||| |||||| ||||||||| Sbjct 16238 AATTTCACTGGGCTAATACTGGAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCG 16297 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||| Sbjct 16298 GAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTA 16357 Query 470 CTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCT 529 ||| | || ||| | ||| || ||| | |||| || || Sbjct 16358 CTGAGATTTATATT-----------------CATGGCGTTTCCACCACTCCTTTTTGTCT 16400 Query 530 TCCAGCACCGGGCAGGCGTCAGTCCGTATACCTCG 564 | |||||||||||||| ||||| || ||||| ||| Sbjct 16401 TTCAGCACCGGGCAGGTGTCAGACCCTATACATCG 16435 >seq26024 Length=1138 Score = 145 bits (160), Expect = 3e-32 Identities = 106/123 (86%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCG 409 |||||||| |||| | | ||||||| |||| ||||||||| |||||| ||||||||| Sbjct 472 AATTTCACTGGGCTAATACTGGAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCG 413 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||| Sbjct 412 GAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTA 353 Query 470 CTG 472 ||| Sbjct 352 CTG 350 >seq46201 Length=665 Score = 131 bits (144), Expect = 6e-28 Identities = 107/126 (85%), Gaps = 3/126 (2%) Strand=Plus/Minus Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCG 409 |||||||| |||| | | ||||||| |||| ||||||||| |||||| ||||||||| Sbjct 157 AATTTCACTGGGCTAATACTGGAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCG 98 Query 410 GAACTTACCCGACAA-GGAATTTCGCTACCTTAGGA-TGGTTATAGTTACCACCG-CCGT 466 ||||| ||||||||| |||||||||||||||||||| |||||| ||||| ||| |||| Sbjct 97 GAACTCACCCGACAAGGGAATTTCGCTACCTTAGGACCGGTTATGGTTACAGCCGTCCGT 38 Query 467 TTACTG 472 |||||| Sbjct 37 TTACTG 32 >seq26025 Length=635 Score = 114 bits (126), Expect = 4e-23 Identities = 81/93 (87%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCG 409 |||||||| |||| | | ||||||| |||| ||||||||| |||||| ||||||||| Sbjct 93 AATTTCACTGGGCTAATACTGGAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCG 34 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAG 442 ||||| ||||||||||||||||||||||||||| Sbjct 33 GAACTCACCCGACAAGGAATTTCGCTACCTTAG 1 >seq40230 Length=496 Score = 100 bits (110), Expect = 1e-18 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCG 409 |||||||| |||| | | ||||||| |||| ||||||||| |||||| ||||||||| Sbjct 85 AATTTCACTGGGCTAATACTGGAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCG 26 Query 410 GAACTTACCCGACAAGGAATTTCGC 434 ||||| ||||||||||||||||||| Sbjct 25 GAACTCACCCGACAAGGAATTTCGC 1 >seq45601 Length=557 Score = 87.8 bits (96), Expect = 6e-15 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCG 409 |||||||| |||| | | ||||||| |||| ||||||||| |||||| ||||||||| Sbjct 78 AATTTCACTGGGCTAATACTGGAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCG 19 Query 410 GAACTTACCCGACAAGGA 427 ||||| |||||||||||| Sbjct 18 GAACTCACCCGACAAGGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701603293824