Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq40440 98.7 2e-18 seq24025 98.7 2e-18 seq46238 95.1 2e-17 seq45372 95.1 2e-17 seq41348 89.7 8e-16 >seq40440 Length=480 Score = 98.7 bits (108), Expect = 2e-18 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| |||||||| ||| | || ||| | |||| Sbjct 413 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCCTTGGTCGACAGGCCAGT 356 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | || ||||||||||| |||||||||||||||||||||||| |||||||| ||| | Sbjct 355 GGGGAGACGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 296 Query 121 G 121 | Sbjct 295 G 295 >seq24025 Length=848 Score = 98.7 bits (108), Expect = 2e-18 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| |||||||| ||| | || ||| | |||| Sbjct 182 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCCTTGGTCGACAGGCCAGT 239 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | || ||||||||||| |||||||||||||||||||||||| |||||||| ||| | Sbjct 240 GGGGAGACGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 299 Query 121 G 121 | Sbjct 300 G 300 >seq46238 Length=561 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| |||||||| ||| | || ||| | |||| Sbjct 492 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCCTTGGTCGACAGGCCAGT 435 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | || ||||||||||| |||||||||||||||||||||||| |||||||| Sbjct 434 GGGGAGACGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCC 381 >seq45372 Length=541 Score = 95.1 bits (104), Expect = 2e-17 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||| ||||||| | || |||||| |||||||| ||| | || ||| | |||| Sbjct 35 GTACGGGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCCTTGGTCGACAGGCCAGT 92 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | || ||||||||||| |||||||||||||||||||||||| |||||||| ||| | Sbjct 93 GGGGAGACGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 152 Query 121 G 121 | Sbjct 153 G 153 >seq41348 Length=604 Score = 89.7 bits (98), Expect = 8e-16 Identities = 91/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 |||||||| | || |||||| |||||||| ||| | || ||| | ||||| | Sbjct 604 AGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCCTTGGTCGACAGGCCAGTGGGGA 547 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 || ||||||||||| |||||||||||||||||||||||| |||||||| ||| || Sbjct 546 GACGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTAG 491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818828603136