Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq12136 338 2e-90 seq42335 181 3e-43 seq31377 159 1e-36 seq27647 152 2e-34 >seq12136 Length=7116 Score = 338 bits (374), Expect = 2e-90 Identities = 283/340 (83%), Gaps = 20/340 (6%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGCCC-TGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||| ||| | |||| | ||||| |||||||||||||||| Sbjct 1468 GTACTCATTCCAATTACACGACTCTTGTCGAGCGCATGTATTGTTATTTATTGTCACTAC 1409 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1408 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 1349 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1348 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGG 1289 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 |||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 1288 TAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCCAT 1229 Query 239 CT---CAAGG-------CCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAGCCCC 287 || ||||| ||||||| || | ||||| ||||||||||| || | Sbjct 1228 CTCCACAAGGAAGATATAAATGCGATCCGAAAGAGTTACTATGAATCACC-AGTA----- 1175 Query 288 GAAGGGCGTTGGTTT-TTTATCTAATAAATACACCCCTTC 326 ||| | |||||| | | ||||||||||||| |||||| Sbjct 1174 AAAGAATGCTGGTTTGTGTGTCTAATAAATACATCCCTTC 1135 Score = 181 bits (200), Expect = 3e-43 Identities = 156/196 (80%), Gaps = 23/196 (12%) Strand=Plus/Minus Query 332 TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--------- 382 ||| | |||| |||||||||||||||||||||||||| |||||||| ||| Sbjct 1066 TCGAGATTTTACGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGATACG 1007 Query 383 -----------GT-AAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 || ||| || ||||||||||| ||||||||||||||||||||| |||| Sbjct 1006 GCTTGCGCCGTGTCAAGAGACCATCAAATAAACTATAACTGATTTAATGAGCCATCCGCA 947 Query 431 GTTTCACTGTATAGATT--GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 || || | ||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 946 GTCTCGCCGTATAAAACAAGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 887 Query 489 ATATGACTACTGGCAG 504 |||||||||||||||| Sbjct 886 ATATGACTACTGGCAG 871 >seq42335 Length=447 Score = 181 bits (200), Expect = 3e-43 Identities = 156/196 (80%), Gaps = 23/196 (12%) Strand=Plus/Plus Query 332 TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--------- 382 ||| | |||| |||||||||||||||||||||||||| |||||||| ||| Sbjct 18 TCGAGATTTTACGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGATACG 77 Query 383 -----------GT-AAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 || ||| || ||||||||||| ||||||||||||||||||||| |||| Sbjct 78 GCTTGCGCCGTGTCAAGAGACCATCAAATAAACTATAACTGATTTAATGAGCCATCCGCA 137 Query 431 GTTTCACTGTATAGATT--GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 || || | ||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 138 GTCTCGCCGTATAAAACAAGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 197 Query 489 ATATGACTACTGGCAG 504 |||||||||||||||| Sbjct 198 ATATGACTACTGGCAG 213 >seq31377 Length=733 Score = 159 bits (176), Expect = 1e-36 Identities = 106/117 (91%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-- 447 || ||||||||||| ||||||||||||||||||||| |||||| || | ||||| | Sbjct 727 ACCATCAAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCGCCGTATAAAACAA 668 Query 448 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 667 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 611 >seq27647 Length=861 Score = 152 bits (168), Expect = 2e-34 Identities = 106/118 (90%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-- 447 || ||||||||||| ||||||||||||||||||||| |||||| || | ||||| | Sbjct 839 ACCATCAAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCGCCGTATAAAACAA 780 Query 448 GCTTATACTTAGACATGCA-TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 779 GCTTATACTTAGACATGCAATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509693147904