Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq10508 194 3e-47 seq10743 190 3e-46 seq10697 127 3e-27 seq10734 114 2e-23 seq10328 109 8e-22 >seq10508 Length=2145 Score = 194 bits (214), Expect = 3e-47 Identities = 130/141 (92%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 388 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 331 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||| ||| |||| |||||||||||||||| |||||| |||||| |||||||| Sbjct 330 CTCGTTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTGCAAAGATT 271 Query 120 ACCCGGACCTGTCGGCCAAGG 140 |||||||||| |||||| ||| Sbjct 270 ACCCGGACCTATCGGCCCAGG 250 Score = 141 bits (156), Expect = 1e-31 Identities = 87/93 (94%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 146 GACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 205 ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 GACTCGTTGGATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 125 Query 206 ACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||||||||||||||||||||||| | ||||| Sbjct 124 ACCTGTTATTGCCTCAAACTTCCGCTGGCTAAA 92 >seq10743 Length=562 Score = 190 bits (210), Expect = 3e-46 Identities = 129/141 (91%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 176 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 119 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||| ||||||| ||| |||| |||||||||||||||| |||||| |||||| |||||||| Sbjct 118 CTCATTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTGCAAAGATT 59 Query 120 ACCCGGACCTGTCGGCCAAGG 140 |||||||||| |||||| ||| Sbjct 58 ACCCGGACCTATCGGCCCAGG 38 >seq10697 Length=497 Score = 127 bits (140), Expect = 3e-27 Identities = 83/89 (93%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| Sbjct 411 GTACAAAGGGCAGGGACGTAATCAACGCGAGC-TGATGACTCGCGCTTACTAGGAA-TTC 468 Query 61 CTCGTTGAAGACCAACAATTGCAATGATC 89 ||||||||||| ||| |||| |||||||| Sbjct 469 CTCGTTGAAGATCAATAATTACAATGATC 497 >seq10734 Length=438 Score = 114 bits (126), Expect = 2e-23 Identities = 75/80 (94%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| Sbjct 79 GTACAAAGGGCAGGGACGTAATCAACGCGAGC-TGATGACTCGCGCTTACTAGGAA-TTC 22 Query 61 CTCGTTGAAGACCAACAATT 80 ||||||||||| ||| |||| Sbjct 21 CTCGTTGAAGATCAATAATT 2 >seq10328 Length=502 Score = 109 bits (120), Expect = 8e-22 Identities = 70/74 (95%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| Sbjct 431 GTACAAAGGGCAGGGACGTAATCAACGCGAGC-TGATGACTCGCGCTTACTAGGAA-TTC 488 Query 61 CTCGTTGAAGACCA 74 ||||||||||| || Sbjct 489 CTCGTTGAAGATCA 502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751921737245