Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq10529 185 4e-44 seq10508 149 3e-33 seq10666 132 2e-28 seq7646 111 7e-22 seq10129 102 3e-19 seq10228 95.1 5e-17 seq10327 80.6 1e-12 >seq10529 Length=2985 Score = 185 bits (204), Expect = 4e-44 Identities = 239/331 (72%), Gaps = 33/331 (10%) Strand=Plus/Minus Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 ||||||||||| || ||| | | || ||||||||| ||||||||||||||||||||||| Sbjct 2753 GGATGCTGGCGGAACGGTGCTGATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACA 2694 Query 441 TCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGT----GA-------AC 489 | |||||||| ||||| |||||| | ||||| | |||||| || || Sbjct 2693 CGTGCGCGAGTGTCCGGGTGGCAAACCTGGGCGCGGAGTGAAAGCAGAGGATAACATTAC 2634 Query 490 GG-------AGGTGGGAACCCGTGAGGGT----------GCACCATCGACCGATCCTGAT 532 || ||||||||| |||||| |||||| || |||| | ||| Sbjct 2633 GGTTATCTGAGGTGGGAAG----GAGGGTCACACTTCCTGCACCACCGGCCGACCTGGAT 2578 Query 533 GTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATG 592 | | | | || |||| | ||||| || |||||||||||||||||| |||||||||| Sbjct 2577 TTTCTTGAAAGG-TTTGCGCTAGAGCGTATTTGTTGGGACCCGAAAGATTGTGAACTATG 2519 Query 593 CCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCA 652 ||| ||| |||||||||||||||||||||||||| || || | | ||| |||||| Sbjct 2518 GGTGACCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGAAGTGATACTGACGTGCA 2459 Query 653 AATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| || || | ||| ||||||||||| Sbjct 2458 AATCGTTCATCTGAGTTGCCTATAGGGGCGA 2428 >seq10508 Length=2145 Score = 149 bits (164), Expect = 3e-33 Identities = 132/163 (81%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 1828 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAAT 1887 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 |||| || |||||||||||||| ||||||| |||| ||||| ||||||| |||||| Sbjct 1888 ATTGCAAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGGTGAAAAGGACTTTG 1947 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| | ||||| | |||||||||| ||||||||| Sbjct 1948 AAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAGGGAAGCG 1989 >seq10666 Length=1393 Score = 132 bits (146), Expect = 2e-28 Identities = 134/173 (77%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 511 TGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGG 570 ||||||| || |||| | ||| | | | | || |||| | ||||| || ||||||| Sbjct 55 TGCACCACCGGCCGACCTGGATTTTCTTGAAAGG-TTTGCGCTAGAGCGTATTTGTTGGG 113 Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||||| Sbjct 114 ACCCGAAAGATTGTGAACTATGGGTGACCAGGACGAAGCCAGAGGAAACTCTGGTGGAGG 173 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || | | ||| ||||||||||| || || | ||| ||||||||||| Sbjct 174 TCCGAAGTGATACTGACGTGCAAATCGTTCATCTGAGTTGCCTATAGGGGCGA 226 >seq7646 Length=389 Score = 111 bits (122), Expect = 7e-22 Identities = 166/240 (69%), Gaps = 33/240 (14%) Strand=Plus/Plus Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 ||||||||||| || ||| | | || ||||||||| ||||||||||||||||||||||| Sbjct 145 GGATGCTGGCGGAACGGTGCTGATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACA 204 Query 441 TCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAA----------------- 483 | |||||||| ||||| |||||| | ||||| | ||||| Sbjct 205 CGTTCGCGAGTGTCCGGGTGGCAAACCTGGGCGCGGAGTGAAAGCAGAGGATAACATTAC 264 Query 484 -GTGAACGGAGGTGGGAACCCGTGAGGG----------TGCACCATCGACCGATCCTGAT 532 || | | |||||||||| ||||| ||||||| || |||| | ||| Sbjct 265 GGTTATCTGAGGTGGGAA----GGAGGGTCACACTTCCTGCACCACCGGCCGACCTGGAT 320 Query 533 GTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATG 592 | | | | || |||| | ||||| || |||||||||||||||||| |||||||||| Sbjct 321 TTTCTTGAAAGG-TTTGCGCTAGAGCGTATTTGTTGGGACCCGAAAGATTGTGAACTATG 379 >seq10129 Length=505 Score = 102 bits (112), Expect = 3e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 ||||||||||| || ||| | | || ||||||||| ||||||||||||||||||||||| Sbjct 285 GGATGCTGGCGGAACGGTGCTGATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACA 344 Query 441 TCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAG 484 | |||||||| ||||| |||||| | ||||| | |||||| Sbjct 345 CGTGCGCGAGTGTCCGGGTGGCAAACCTGGGCGCGGAGTGAAAG 388 >seq10228 Length=396 Score = 95.1 bits (104), Expect = 5e-17 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 ||||||||||| || ||| | | || ||||||||| ||||||||||||||||||||||| Sbjct 96 GGATGCTGGCGGAACGGTGCTGATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACA 37 Query 441 TCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCG 475 | |||||||| ||||| |||||| | ||||| Sbjct 36 CGTGCGCGAGTGTCCGGGTGGCAAACCTGGGCGCG 2 >seq10327 Length=636 Score = 80.6 bits (88), Expect = 1e-12 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 605 GAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA 664 |||||||||||||||||||||||||| || || | | ||| ||||||||||| || || Sbjct 11 GAAGCCAGAGGAAACTCTGGTGGAGGTCCGAAGTGATACTGACGTGCAAATCGTTCATCT 70 Query 665 AATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| Sbjct 71 GAGTTGCCTATAGGGGCGA 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079769562650