Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq10293 100 7e-19 seq10519 95.1 3e-17 seq10376 95.1 3e-17 seq10375 82.4 2e-13 seq10356 77.0 8e-12 seq7687 77.0 8e-12 >seq10293 Length=446 Score = 100 bits (110), Expect = 7e-19 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||||| | |||||| ||||||||||| |||||||||||| || | || Sbjct 214 TACTTGAAGGAGAAGCACTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 273 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT 107 || |||| ||| | | |||||| |||||| ||||| ||| |||| Sbjct 274 TAGTGTTATTCGTATTGACTGGGTGTAAAGGGTGCGTAGGTGGTT 318 >seq10519 Length=1518 Score = 95.1 bits (104), Expect = 3e-17 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| ||||||||||| |||||||||||| || | || Sbjct 1281 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 1340 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT 107 || |||| ||| | | |||||| |||||| ||||| ||| |||| Sbjct 1341 TAGTGTTATTCGTATTGACTGGGTGTAAAGGGTGCGTAGGTGGTT 1385 >seq10376 Length=508 Score = 95.1 bits (104), Expect = 3e-17 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| ||||||||||| |||||||||||| || | || Sbjct 183 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 124 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT 107 || |||| ||| | | |||||| |||||| ||||| ||| |||| Sbjct 123 TAGTGTTATTCGTATTGACTGGGTGTAAAGGGTGCGTAGGTGGTT 79 >seq10375 Length=645 Score = 82.4 bits (90), Expect = 2e-13 Identities = 80/102 (78%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 237 CAAT-GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAG 295 |||| ||||||||| || || ||| |||||| || | |||| ||||| | |||| Sbjct 642 CAATAGGCGAAGGCTGCTATCTACTCTAATACTGACACTGAGGCACAAAAGCATAGGGAT 583 Query 296 CAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||| |||||||||||| | ||||| | |||| Sbjct 582 CAAACAGGATTAGAGACCCTGGTAGTCTATGCCCTGACCGAT 541 >seq10356 Length=403 Score = 77.0 bits (84), Expect = 8e-12 Identities = 79/102 (77%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 237 CAAT-GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAG 295 |||| ||||||||| || || ||| |||||| || | |||| ||||| | |||| Sbjct 156 CAATAGGCGAAGGCTGCTATCTACTCTAATACTGACACTGAGGCACAAAAGCATAGGGAT 215 Query 296 CAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||| |||||||||||| | || || | |||| Sbjct 216 CAAACAGGATTAGAGACCCTGGTAGTCTATGCACTGACCGAT 257 >seq7687 Length=501 Score = 77.0 bits (84), Expect = 8e-12 Identities = 79/102 (77%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 237 CAAT-GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAG 295 |||| ||||||||| || || ||| |||||| || | |||| ||||| | |||| Sbjct 178 CAATAGGCGAAGGCTGCTATCTACTCTAATACTGACACTGAGGCACAAAAGCATAGGGAT 237 Query 296 CAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||| |||||||||||| | | ||| | |||| Sbjct 238 CAAACAGGATTAGAGACCCTGGTAGTCTATGTCCTGACCGAT 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289461458272