Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq10418 161 3e-37 seq10375 118 3e-24 seq10359 98.7 3e-18 seq7687 98.7 3e-18 seq10356 82.4 2e-13 >seq10418 Length=478 Score = 161 bits (178), Expect = 3e-37 Identities = 243/341 (71%), Gaps = 17/341 (5%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||||||||| ||| |||||| |||| ||||| ||||| || ||| Sbjct 408 ACAGGTGCTGCATGGTTGTCGGCAGTTCGTGTTGTGAAATGTTTTGTTAATTCATTTAAC 349 Query 216 GAGCGCAACCCTTAAGCTT-AGTTGCCATCATTAAGTTGGGCACT--CTAAGTTGACTGC 272 | ||||||| || |||| | ||| | | || | | ||| | |||| |||| Sbjct 348 GGACGCAACC-TTCGGCTTTATTTGTTTTAAAAAAATAGAGCAATTACTAATTTGAA--- 293 Query 273 CGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGG 332 | || || |||| | ||| | ||||||||| ||| || ||| |||| Sbjct 292 -----AATTACTTGA--AAGGAGAGGAAG---TCAAATCATTATGGCCTATATAGGTTGG 243 Query 333 GCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAAT 392 ||||||||||| ||||||||| | ||||| | | ||| | | || ||| | ||| ||| Sbjct 242 GCTACACACGTACTACAATGGTAACTACAATGTGAAGCAAGAGCGTGAGCTGGAGCTAAT 183 Query 393 CCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAAT 452 | |||||| |||||||| |||| | |||||||||||| |||||||| ||||| Sbjct 182 CATTAAAAGTTAACCTCAGTTCTGATTATTCTCTGCAACTCGAGAATATGAAGTCGGAAT 123 Query 453 CGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTC 493 |||||||||||| ||| || | ||| |||||||||| ||| Sbjct 122 CGCTAGTAATCGCAGAATAGAACGCTGCGGTGAATACATTC 82 >seq10375 Length=645 Score = 118 bits (130), Expect = 3e-24 Identities = 208/299 (70%), Gaps = 17/299 (6%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||||||||| ||| |||||| |||| ||||| ||||| || ||| Sbjct 285 ACAGGTGCTGCATGGTTGTCGACAGTTCGTGTTGTGAAATGTTTTGTTAATTCATTTAAC 226 Query 216 GAGCGCAACCCTTAAGCTT-AGTTGCCATCATTAAGTTGGGCACT--CTAAGTTGACTGC 272 | ||||||| || |||| | ||| | | || | | ||| | |||| |||| Sbjct 225 GGACGCAACC-TTCGGCTTTATTTGTTTTAAAAAAATAGAGCAATTACTAATTTGAA--- 170 Query 273 CGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGG 332 | || || |||| | ||| | ||||||||| ||| || ||| |||| Sbjct 169 -----AATTACTTGA--AAGGAGAGGAAG---TCAAATCATTATGGCCTATATAGGTTGG 120 Query 333 GCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAAT 392 ||||||||||| ||||||||| | ||||| | | ||| | | || ||| | ||| ||| Sbjct 119 GCTACACACGTACTACAATGGTAACTACAATGTGAAGCAAGAGCGTGAGCTGGAGCTAAT 60 Query 393 CCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAA 451 | |||||| |||||||| |||| | |||||||||||| |||||||| |||| Sbjct 59 CATTAAAAGTTAACCTCAGTTCTGATTATTCTCTGCAACTCGAGAATATGAAGTCGGAA 1 Score = 98.7 bits (108), Expect = 3e-18 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 482 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTAT 423 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 422 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 379 >seq10359 Length=502 Score = 98.7 bits (108), Expect = 3e-18 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 65 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTAT 124 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 125 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 168 >seq7687 Length=501 Score = 98.7 bits (108), Expect = 3e-18 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 338 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTAT 397 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 398 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 441 >seq10356 Length=403 Score = 82.4 bits (90), Expect = 2e-13 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 316 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTAT 375 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAA 88 ||||||||||| || ||||| ||||| Sbjct 376 GTGGTTTAATTTGATATAACGCAAAGAA 403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503838425280