Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq10519 134 3e-29 seq10376 134 3e-29 seq10293 120 7e-25 >seq10519 Length=1518 Score = 134 bits (148), Expect = 3e-29 Identities = 142/181 (78%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || |||||||||||||||||||||| ||||||| Sbjct 1234 CCTTCTCATCACCCACGTAACATTA-CTCGATCAGGCTTTCGCCCATTGTCAAATATTCT 1176 Query 76 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 |||||||||| || || || | ||| |||| | ||||| ||| |||| |||||||| Sbjct 1175 CCACTGCTGC--CCTTTAAAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 1119 Query 135 CTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 |||||| ||||| || | ||||| | |||| ||| |||||| || |||||| |||||| Sbjct 1118 CTCTCAAACCAGCTAAGCATCGTAGGCTTGTTGAATAATTACCACAACAACTACCTAATC 1059 Query 195 C 195 | Sbjct 1058 C 1058 >seq10376 Length=508 Score = 134 bits (148), Expect = 3e-29 Identities = 142/181 (78%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || |||||||||||||||||||||| ||||||| Sbjct 230 CCTTCTCATCACCCACGTAACATTA-CTCGATCAGGCTTTCGCCCATTGTCAAATATTCT 288 Query 76 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 |||||||||| || || || | ||| |||| | ||||| ||| |||| |||||||| Sbjct 289 CCACTGCTGC--CCTTTAAAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 345 Query 135 CTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 |||||| ||||| || | ||||| | |||| ||| |||||| || |||||| |||||| Sbjct 346 CTCTCAAACCAGCTAAGCATCGTAGGCTTGTTGAATAATTACCACAACAACTACCTAATC 405 Query 195 C 195 | Sbjct 406 C 406 >seq10293 Length=446 Score = 120 bits (132), Expect = 7e-25 Identities = 133/171 (78%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || |||||||||||||||||||||| ||||||| Sbjct 167 CCTTCTCATCACCCACGTAACATTA-CTCGATCAGGCTTTCGCCCATTGTCAAATATTCT 109 Query 76 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 |||||||||| || || || | ||| |||| | ||||| ||| |||| |||||||| Sbjct 108 CCACTGCTGC--CCTTTAAAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 52 Query 135 CTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAAC 185 |||||| ||||| || | ||||| | |||| ||| |||||| || |||| Sbjct 51 CTCTCAAACCAGCTAAGCATCGTAGGCTTGTTGAATAATTACCACAACAAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071884835040