Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq10240 87.8 7e-15 seq10337 86.0 2e-14 >seq10240 Length=487 Score = 87.8 bits (96), Expect = 7e-15 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| ||| || ||||| ||| ||| |||||| ||||||| Sbjct 90 ACGCTCTACCTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATTAGCCTTTC 149 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCG 254 ||||||| | || ||||||| | | | |||| || |||||||| |||||| Sbjct 150 ACCCCTAGCTACCACTCATCCCGGTATTATGCAACATACATGGGTTCGATCCTCCGATAC 209 Query 255 GTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTT 307 || ||| | |||| ||| | || ||||||| ||| | ||| ||||| Sbjct 210 GTTTTAAAGTATCCTCAATCTGACAATAAATAGATCGCTTAGTATCGAGTCTT 262 >seq10337 Length=526 Score = 86.0 bits (94), Expect = 2e-14 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| ||| || ||||| ||| ||| |||||| ||||||| Sbjct 156 ACGCTCTACCTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATTAGCCTTTC 97 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCC 249 ||||||| | || ||||||| | | | |||| || |||||||| |||||| Sbjct 96 ACCCCTAGCTACCACTCATCCCGGTATTATGCAACATACATGGGTTCGATCCTCC 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817404735232