Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq10519 104 5e-20 seq10376 104 5e-20 seq10293 87.8 4e-15 >seq10519 Length=1518 Score = 104 bits (114), Expect = 5e-20 Identities = 115/150 (77%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGC 70 |||||| |||| |||||||| ||||| | ||||||||||| | || || || |||| Sbjct 1205 ATCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC--CTTTAAAAGACTTGGGC 1148 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | |||||||||||||||| | ||| |||||| || |||| ||||| |||||| Sbjct 1147 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTAGGCTTG 1089 Query 131 GTGGGCTATTATCTCACCAACTACCTAATC 160 || |||| | || ||||||||||||| Sbjct 1088 TTGAATAATTACCACAACAACTACCTAATC 1059 >seq10376 Length=508 Score = 104 bits (114), Expect = 5e-20 Identities = 115/150 (77%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGC 70 |||||| |||| |||||||| ||||| | ||||||||||| | || || || |||| Sbjct 259 ATCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC--CTTTAAAAGACTTGGGC 316 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | |||||||||||||||| | ||| |||||| || |||| ||||| |||||| Sbjct 317 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTAGGCTTG 375 Query 131 GTGGGCTATTATCTCACCAACTACCTAATC 160 || |||| | || ||||||||||||| Sbjct 376 TTGAATAATTACCACAACAACTACCTAATC 405 >seq10293 Length=446 Score = 87.8 bits (96), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGC 70 |||||| |||| |||||||| ||||| | ||||||||||| | || || || |||| Sbjct 138 ATCAGGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC--CTTTAAAAGACTTGGGC 81 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | |||||||||||||||| | ||| |||||| || |||| ||||| |||||| Sbjct 80 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTAGGCTTG 22 Query 131 GTGGGCTATTATCTCACCAAC 151 || |||| | || |||| Sbjct 21 TTGAATAATTACCACAACAAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998292741888