Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq10519 111 4e-22 seq10376 111 4e-22 seq10293 98.7 2e-18 >seq10519 Length=1518 Score = 111 bits (122), Expect = 4e-22 Identities = 136/181 (75%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 19 GCCTTCT--TCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 ||||||| ||| |||| ||| || ||||||||| |||||||||| ||||||| Sbjct 1235 GCCTTCTCATCACCCACGTAACATTACTCGATCAGGCTTTCGCCCATTGTCAAATATTCT 1176 Query 77 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATC 135 |||||||||| || || || | ||| |||| | ||||| ||| |||||||| |||| Sbjct 1175 CCACTGCTGC--CCTTTAAAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 1119 Query 136 CTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||||| |||||||| | ||||| | || | || |||||| | |||||| |||||| Sbjct 1118 CTCTCAAACCAGCTAAGCATCGTAGGCTTGTTGAATAATTACCACAACAACTACCTAATC 1059 Query 196 C 196 | Sbjct 1058 C 1058 >seq10376 Length=508 Score = 111 bits (122), Expect = 4e-22 Identities = 136/181 (75%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 19 GCCTTCT--TCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 ||||||| ||| |||| ||| || ||||||||| |||||||||| ||||||| Sbjct 229 GCCTTCTCATCACCCACGTAACATTACTCGATCAGGCTTTCGCCCATTGTCAAATATTCT 288 Query 77 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATC 135 |||||||||| || || || | ||| |||| | ||||| ||| |||||||| |||| Sbjct 289 CCACTGCTGC--CCTTTAAAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 345 Query 136 CTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||||| |||||||| | ||||| | || | || |||||| | |||||| |||||| Sbjct 346 CTCTCAAACCAGCTAAGCATCGTAGGCTTGTTGAATAATTACCACAACAACTACCTAATC 405 Query 196 C 196 | Sbjct 406 C 406 >seq10293 Length=446 Score = 98.7 bits (108), Expect = 2e-18 Identities = 127/171 (74%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 19 GCCTTCT--TCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 ||||||| ||| |||| ||| || ||||||||| |||||||||| ||||||| Sbjct 168 GCCTTCTCATCACCCACGTAACATTACTCGATCAGGCTTTCGCCCATTGTCAAATATTCT 109 Query 77 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATC 135 |||||||||| || || || | ||| |||| | ||||| ||| |||||||| |||| Sbjct 108 CCACTGCTGC--CCTTTAAAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 52 Query 136 CTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAAC 186 |||||| |||||||| | ||||| | || | || |||||| | |||| Sbjct 51 CTCTCAAACCAGCTAAGCATCGTAGGCTTGTTGAATAATTACCACAACAAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222268677568