Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq10519 215 2e-53 seq10376 215 2e-53 seq10293 201 3e-49 >seq10519 Length=1518 Score = 215 bits (238), Expect = 2e-53 Identities = 256/339 (76%), Gaps = 10/339 (3%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| |||||| | ||||| | | |||| | ||||| |||| | |||||| Sbjct 1059 GATTAGGTAGTTGTTGTGGTAATTATTCAACAAGCCTACGATGCTTAGCTGGTTTGAGAG 1118 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAA-CTCCTACGGGAGGCAGCAGTGG 285 ||||| |||||||||| ||||| | |||| |||| || || || |||||||||| Sbjct 1119 AATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTTTAAAGG--GCAGCAGTGG 1175 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA--AGGC 343 ||||||| ||||||||| |||||||||| || || | |||| | ||||| |||| Sbjct 1176 AGAATATTTGACAATGGGCGAAAGCCTGATCGAGTAATGTTACGTGGGTGATGAGAAGGC 1235 Query 344 CTTCGGGTCGTAAAGCTC-TGTCCTCAAGGAAGATAATG--ACGGTACTTGAGGAGGAAG 400 | | |||||| | | | || ||||||| |||||| | |||||||| | |||| Sbjct 1236 TTAATTGCCGTAAAACCCGTTTCGTCAAGGATTATAATGCAATCGTACTTGAAGGAGAAG 1295 Query 401 CCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAA 460 ||| | |||||| ||||||||||| |||||||||||| || ||||||| ||||| || | Sbjct 1296 CCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCTAGTGTTATTCGTAT 1355 Query 461 TTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | ||| ||| |||||||||||||||||||||| |||||| Sbjct 1356 TGACT-GGGTGTAAAGGGTGCGTAGGTGGTTTATTAAGT 1393 >seq10376 Length=508 Score = 215 bits (238), Expect = 2e-53 Identities = 256/339 (76%), Gaps = 10/339 (3%) Strand=Plus/Minus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| |||||| | ||||| | | |||| | ||||| |||| | |||||| Sbjct 405 GATTAGGTAGTTGTTGTGGTAATTATTCAACAAGCCTACGATGCTTAGCTGGTTTGAGAG 346 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAA-CTCCTACGGGAGGCAGCAGTGG 285 ||||| |||||||||| ||||| | |||| |||| || || || |||||||||| Sbjct 345 AATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTTTAAAGG--GCAGCAGTGG 289 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA--AGGC 343 ||||||| ||||||||| |||||||||| || || | |||| | ||||| |||| Sbjct 288 AGAATATTTGACAATGGGCGAAAGCCTGATCGAGTAATGTTACGTGGGTGATGAGAAGGC 229 Query 344 CTTCGGGTCGTAAAGCTC-TGTCCTCAAGGAAGATAATG--ACGGTACTTGAGGAGGAAG 400 | | |||||| | | | || ||||||| |||||| | |||||||| | |||| Sbjct 228 TTAATTGCCGTAAAACCCGTTTCGTCAAGGATTATAATGCAATCGTACTTGAAGGAGAAG 169 Query 401 CCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAA 460 ||| | |||||| ||||||||||| |||||||||||| || ||||||| ||||| || | Sbjct 168 CCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCTAGTGTTATTCGTAT 109 Query 461 TTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | ||| ||| |||||||||||||||||||||| |||||| Sbjct 108 TGACT-GGGTGTAAAGGGTGCGTAGGTGGTTTATTAAGT 71 >seq10293 Length=446 Score = 201 bits (222), Expect = 3e-49 Identities = 235/309 (76%), Gaps = 10/309 (3%) Strand=Plus/Plus Query 197 CAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACG 256 |||| | ||||| |||| | |||||| ||||| |||||||||| ||||| | ||| Sbjct 22 CAAGCCTACGATGCTTAGCTGGTTTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACG 80 Query 257 GTCCAAA-CTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGAT 315 | |||| || || || |||||||||| ||||||| ||||||||| |||||||||| Sbjct 81 GCCCAAGTCTTTTAAAGG--GCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCCTGAT 138 Query 316 GCAGCAACGCCGCGTGAGCGATGA--AGGCCTTCGGGTCGTAAAGCTC-TGTCCTCAAGG 372 || || | |||| | ||||| |||| | | |||||| | | | || |||||| Sbjct 139 CGAGTAATGTTACGTGGGTGATGAGAAGGCTTAATTGCCGTAAAACCCGTTTCGTCAAGG 198 Query 373 AAGATAATG--ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGG 430 | |||||| | |||||||| | ||||| | | |||||| ||||||||||| ||||| Sbjct 199 ATTATAATGCAATCGTACTTGAAGGAGAAGCACTGACTAACTTCGTGCCAGCAGTCGCGG 258 Query 431 TAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 ||||||| || ||||||| ||||| || | | ||| ||| |||||||||||||||||||| Sbjct 259 TAATACGGAGAGGGCTAGTGTTATTCGTATTGACT-GGGTGTAAAGGGTGCGTAGGTGGT 317 Query 491 TTCTTAAGT 499 || |||||| Sbjct 318 TTATTAAGT 326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497439112832