Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq10519 132 1e-28 seq10376 132 1e-28 seq10293 127 5e-27 seq7687 102 2e-19 seq10375 96.9 8e-18 seq10356 93.3 1e-16 >seq10519 Length=1518 Score = 132 bits (146), Expect = 1e-28 Identities = 97/113 (86%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || |||| Sbjct 1281 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 1340 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 ||| ||||| || | | |||||| |||||||||||||||||||||| |||||| Sbjct 1341 TAGTGTTATTCGTATTGACTGGGTGTAAAGGGTGCGTAGGTGGTTTATTAAGT 1393 >seq10376 Length=508 Score = 132 bits (146), Expect = 1e-28 Identities = 97/113 (86%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || |||| Sbjct 183 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 124 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 ||| ||||| || | | |||||| |||||||||||||||||||||| |||||| Sbjct 123 TAGTGTTATTCGTATTGACTGGGTGTAAAGGGTGCGTAGGTGGTTTATTAAGT 71 >seq10293 Length=446 Score = 127 bits (140), Expect = 5e-27 Identities = 96/113 (85%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||||| | ||||| | | |||||| ||||||||||| |||||||||||| || |||| Sbjct 214 TACTTGAAGGAGAAGCACTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 273 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 ||| ||||| || | | |||||| |||||||||||||||||||||| |||||| Sbjct 274 TAGTGTTATTCGTATTGACTGGGTGTAAAGGGTGCGTAGGTGGTTTATTAAGT 326 >seq7687 Length=501 Score = 102 bits (112), Expect = 2e-19 Identities = 202/294 (69%), Gaps = 20/294 (7%) Strand=Plus/Plus Query 57 GGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT--C 114 ||||||| ||||| || | | |||||| |||||||||||||||||||||| |||||| | Sbjct 1 GGGCTAGTGTTATTCGTATTGACTGGGTGTAAAGGGTGCGTAGGTGGTTTATTAAGTTTC 60 Query 115 AGAGGTGA----AAGGCTATGGCTCAACCCCGGGACTGCTTTTGAA-ACTGCAGGGCTAG 169 | || | ||| || ||| || | |||||| || ||| | |||| Sbjct 61 AAAGAAAATATTAAGCATAGAGCTTAAAC--------GCTTTTTAATACTAATAGACTAG 112 Query 170 AGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATAT-TAGGAG 228 ||| | | | || ||| ||||| |||||||| | || || || | Sbjct 113 AGTTTAAAGGAAGATAGCTGAACATTAGGTGTAAAGGTGAAATTTTTCGAGATCTAAAGG 172 Query 229 GAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAA--CTGACACTGAGGCTCGAAAGCG 286 | | | | ||||||||| ||| || ||| ||| ||||||||||||| | ||||| Sbjct 173 GCAGTCAATAGGCGAAGGCTGCTATCT--ACTCTAATACTGACACTGAGGCACAAAAGCA 230 Query 287 TGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATA 340 | |||| |||||||||||||| |||||||||||| | | | | | ||||||||| Sbjct 231 TAGGGATCAAACAGGATTAGAGACCCTGGTAGTCTATGTCCTGACCGATGAATA 284 >seq10375 Length=645 Score = 96.9 bits (106), Expect = 8e-18 Identities = 85/104 (82%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 239 GGCGAAGGCGGCTTGCTGGACTGTAA--CTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296 ||||||||| ||| || ||| ||| ||||||||||||| | ||||| | |||| ||| Sbjct 637 GGCGAAGGCTGCTATCT--ACTCTAATACTGACACTGAGGCACAAAAGCATAGGGATCAA 580 Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATA 340 ||||||||||| |||||||||||| | ||| | | ||||||||| Sbjct 579 ACAGGATTAGAGACCCTGGTAGTCTATGCCCTGACCGATGAATA 536 >seq10356 Length=403 Score = 93.3 bits (102), Expect = 1e-16 Identities = 84/104 (81%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 239 GGCGAAGGCGGCTTGCTGGACTGTAA--CTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296 ||||||||| ||| || ||| ||| ||||||||||||| | ||||| | |||| ||| Sbjct 161 GGCGAAGGCTGCTATCT--ACTCTAATACTGACACTGAGGCACAAAAGCATAGGGATCAA 218 Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATA 340 ||||||||||| |||||||||||| | || | | ||||||||| Sbjct 219 ACAGGATTAGAGACCCTGGTAGTCTATGCACTGACCGATGAATA 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203070740224