Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq10508 172 1e-40 seq10743 168 1e-39 seq10697 129 1e-27 seq10734 122 2e-25 seq10328 111 3e-22 >seq10508 Length=2145 Score = 172 bits (190), Expect = 1e-40 Identities = 121/138 (88%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| |||||||||| ||| | |||||||||||||||| ||||| Sbjct 250 CCTGGGCCGATAGGTCCGGGTAATCTTTGCAAATTTAATCGTGCTGGGGATAGATCATTG 309 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||| Sbjct 310 TAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATT 369 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 370 ACGTCCCTGCCCTTTGTA 387 Score = 131 bits (144), Expect = 3e-28 Identities = 78/82 (95%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 102 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 161 Query 163 TACACTGACAGAGCCAACGAGT 184 |||||||| | ||||||||| Sbjct 162 TACACTGATTAATCCAACGAGT 183 >seq10743 Length=562 Score = 168 bits (186), Expect = 1e-39 Identities = 120/138 (87%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| |||||||||| ||| | |||||||||||||||| ||||| Sbjct 38 CCTGGGCCGATAGGTCCGGGTAATCTTTGCAAATTTAATCGTGCTGGGGATAGATCATTG 97 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| ||||||| ||||||| ||||||||||||| ||||||||| |||||||||| Sbjct 98 TAATTATTGATCTTCAATGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATT 157 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 158 ACGTCCCTGCCCTTTGTA 175 >seq10697 Length=497 Score = 129 bits (142), Expect = 1e-27 Identities = 80/86 (93%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 243 GAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACG 302 || ||||| |||||||| ||||||||||||||| ||||||||||||| ||||||||| || Sbjct 497 GATCATTGTAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCG 438 Query 303 CGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||||||||| Sbjct 437 CGTTGATTACGTCCCTGCCCTTTGTA 412 >seq10734 Length=438 Score = 122 bits (134), Expect = 2e-25 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 |||||||| ||||||||||||||| ||||||||||||| ||||||||| ||||||||||| Sbjct 2 AATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATTA 61 Query 312 CGTCCCTGCCCTTTGTA 328 ||||||||||||||||| Sbjct 62 CGTCCCTGCCCTTTGTA 78 >seq10328 Length=502 Score = 111 bits (122), Expect = 3e-22 Identities = 67/71 (94%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 || ||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| Sbjct 502 TGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATTACGTCCC 443 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 442 TGCCCTTTGTA 432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947098242304