Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq10240 100 1e-18 seq10337 96.9 1e-17 >seq10240 Length=487 Score = 100 bits (110), Expect = 1e-18 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 |||| ||| || ||| |||||| || | ||| ||| | | | ||| ||| ||| Sbjct 261 AGACTCGATACTAAGCGATCTATTTATTGTCAGATTGAGGATACTTTAAAACGTATCGGA 202 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||| |||||| | ||| |||||||| || | ||||||||||||||| Sbjct 201 GGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGTGAAAGGCT 142 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 || ||| ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 141 AATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 92 >seq10337 Length=526 Score = 96.9 bits (106), Expect = 1e-17 Identities = 291/434 (67%), Gaps = 19/434 (4%) Strand=Plus/Plus Query 50 GATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAA 109 |||||| || ||||| ||| | | | ||| ||| ||||| |||||||| | Sbjct 1 GATCTATTTATTGCCAGATTGAGGATACTTTAAAACGTATCGGAGGATCGAACCCATGTA 60 Query 110 TGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAAT 169 ||||| | ||| |||||||| || | ||||||||||||||||| ||| ||| | | Sbjct 61 TGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTAGTGTT 120 Query 170 AGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCT--CAAGTATCACCATCGGGGGTAG 227 |||| || |||| ||||| |||||||||||| || | || | || || | ||||| Sbjct 121 AGCTAGTACTCTACGAAATCTATTTAGGTAGAGCGTTCTGAGGA-CATTATTGCTGGTAG 179 Query 228 AGCACT-GTTATGGCTAGGGGGTC-ATTGCGACTTACCAAACCATTGCAAACTCCGAATG 285 ||| || | || || | ||| | | | | | ||| | | ||||| ||||| Sbjct 180 AGCTCTAGATA-AGCAATGGGAACTAATACTTC-TACTGAGTTTATTTAAACTACGAATA 237 Query 286 CGCATCAGTT--TTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGA 343 || | || |||| | || || |||| || ||||| ||| | | ||| Sbjct 238 GCAATTAATTAATTACAG-AACAGGCAGATTGTGGGCGCGAAGGTTCGTAATCAAAAGGG 296 Query 344 GAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGT---TAAACTAACGAA 400 || | || || |||||||||| | || ||| | | ||||| | || |||| Sbjct 297 AAACAGCCCAGAATATCAGCTAAAGTCCATAAA-AATAATTAAGTGTATGAAATAAC--- 352 Query 401 GTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGC 460 || | || || |||| ||||| |||||||| |||||||||| || |||||||| || Sbjct 353 TTCCG-GTGTTATTACAGTTAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGC 410 Query 461 GTAACAGCTCACTA 474 |||||||||||||| Sbjct 411 GTAACAGCTCACTA 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689418486272