Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq10382 201 4e-49 seq10009 143 9e-32 seq7617 143 9e-32 seq10422 134 5e-29 seq10504 104 8e-20 >seq10382 Length=424 Score = 201 bits (222), Expect = 4e-49 Identities = 113/114 (99%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 60 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 114 >seq10009 Length=335 Score = 143 bits (158), Expect = 9e-32 Identities = 100/114 (88%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 4 CTTTTGTTCCACATGAGATTTCTGTTCTCATTGAGCTCATCTTAGGACACCTGCGTTATC 63 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACC 120 |||||||||||||||||||||||||||||||||||||||| ||||| || ||| Sbjct 64 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCCTCGACC 117 >seq7617 Length=456 Score = 143 bits (158), Expect = 9e-32 Identities = 81/82 (99%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 452 ACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGG 511 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 456 ACTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTTGACATTCAGAGCACTGGG 397 Query 512 CAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||| Sbjct 396 CAGAAATCACATTGCGTCAACA 375 >seq10422 Length=470 Score = 134 bits (148), Expect = 5e-29 Identities = 100/116 (86%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTT--CTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTA 64 |||||| || ||| ||||||| |||||||| |||| | |||||||||||||||||| Sbjct 226 CTTTTGTTCCACATGAGATTTTTCTGTTCTCATTGAGCTCATCTTAGGACACCTGCGTTA 285 Query 65 TGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACC 120 | |||||||||||||||||||||||||||||||||||||||| ||||| || ||| Sbjct 286 TCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCCTCGACC 341 >seq10504 Length=564 Score = 104 bits (114), Expect = 8e-20 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 || |||||||||||||||| |||| |||||||||||||| ||||||||||||||||| Sbjct 29 CGCCTCCCACTTATTCTACGCCTCCAGCGTCATTTCACAAAGCCGGACTAGAGTCAAGCT 88 Query 294 CAACAGGGTCTTCTT 308 ||||||||||||||| Sbjct 89 CAACAGGGTCTTCTT 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635024330464